SMTL ID : 2vj1.1

A Structural View of the Inactivation of the SARS-Coronavirus Main Proteinase by Benzotriazole Esters

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

homo-dimer

Ligands

3 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.1: 1 residues within 4Å: Chain A: Q.255 No protein-ligand interaction detected (PLIP) DMS.3: 8 residues within 4Å: Chain A: K.4, V.124, Q.126 Chain B: K.4, M.5, A.6, Y.125, Q.126 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.126 DMS.4: 3 residues within 4Å: Chain B: T.242, Q.243, D.244 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:T.242, B:Q.243, B:D.244 Salt bridges: B:D.244

1 x BEZ: BENZOIC ACID(Covalent)

BEZ.2: 8 residues within 4Å: Chain A: H.40, M.48, H.163, M.164, V.185, D.186, R.187, Q.188 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:M.48, A:M.164 Hydrogen bonds: A:H.163 Salt bridges: A:H.40

1 x XP1: 4-(DIMETHYLAMINO)BENZOIC ACID(Covalent)

XP1.5: 6 residues within 4Å: Chain B: L.140, N.141, G.142, C.144, H.162, E.165 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:N.141, B:E.165 Hydrogen bonds: B:C.144

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Verschueren, K.H.G. et al., A Structural View of the Inactivation of the Sars Coronavirus Main Proteinase by Benzotriazole Esters. Chem.Biol. (2008)

Release Date

2008-07-01

Peptides

SARS CORONAVIRUS MAIN PROTEINASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

SARS CORONAVIRUS MAIN PROTEINASE