SMTL ID : 2vji.1

Tailspike protein of E.coli bacteriophage HK620

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.38 Å

Oligo State

homo-trimer

Ligands

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 3 residues within 4Å: Chain A: N.148, E.150, Y.183 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.150 Water bridges: A:N.148 EDO.5: 3 residues within 4Å: Chain B: N.148, E.150, Y.183 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.150 Water bridges: B:N.148 EDO.9: 3 residues within 4Å: Chain C: N.148, E.150, Y.183 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:E.150 Water bridges: C:N.148

3 x PG0: 2-(2-METHOXYETHOXY)ETHANOL(Non-functional Binders)

PG0.2: 5 residues within 4Å: Chain A: N.257, F.348, S.349, A.350, P.351 No protein-ligand interaction detected (PLIP) PG0.6: 5 residues within 4Å: Chain B: N.257, F.348, S.349, A.350, P.351 No protein-ligand interaction detected (PLIP) PG0.10: 5 residues within 4Å: Chain C: N.257, F.348, S.349, A.350, P.351 No protein-ligand interaction detected (PLIP)

3 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.3: 5 residues within 4Å: Chain A: S.487, Y.488, A.515, N.516 Ligands: CL.4 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.516 Water bridges: A:A.515 PO4.7: 5 residues within 4Å: Chain B: S.487, Y.488, A.515, N.516 Ligands: CL.8 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.516 Water bridges: B:A.515 PO4.11: 5 residues within 4Å: Chain C: S.487, Y.488, A.515, N.516 Ligands: CL.12 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:N.516 Water bridges: C:A.515

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 6 residues within 4Å: Chain A: S.487, Y.488, A.515, N.516, V.517 Ligands: PO4.3 Ligand excluded by PLIP CL.8: 6 residues within 4Å: Chain B: S.487, Y.488, A.515, N.516, V.517 Ligands: PO4.7 Ligand excluded by PLIP CL.12: 6 residues within 4Å: Chain C: S.487, Y.488, A.515, N.516, V.517 Ligands: PO4.11 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Barbirz, S. et al., Crystal Structure of Escherichia Coli Phage Hk620 Tailspike: Podoviral Tailspike Endoglycosidase Modules are Evolutionarily Related. Mol.Microbiol. (2008)

Release Date

2008-07-01

Peptides

TAILSPIKE PROTEIN: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

TAILSPIKE PROTEIN

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