SMTL ID : 2vju.1

Crystal structure of the IS608 transposase in complex with the complete Right end 35-mer DNA and manganese

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-dimer

Ligands

3 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 4 residues within 4Å: Chain A: H.68, H.70 Chain B: Q.135 Chain C: A.35 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.68, A:H.70, H2O.2, H2O.4 MN.2: 4 residues within 4Å: Chain B: N.16 Chain C: T.4, G.22, G.23 No protein-ligand interaction detected (PLIP) MN.3: 3 residues within 4Å: Chain A: N.16 Chain D: G.22, G.23 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Barabas, O. et al., Mechanism of is200/is605 Family DNA Transposases: Activation and Transposon-Directed Target Site Selection. Cell(Cambridge,Mass.) (2008)

Release Date

2008-02-19

Peptides

TRANSPOSASE ORFA: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

TRANSPOSASE ORFA

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