- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x TPP: THIAMINE DIPHOSPHATE(Non-covalent)
- 2 x MG: MAGNESIUM ION(Non-covalent)
MG.2: 6 residues within 4Å:- Chain A: D.444, G.445, L.469, N.471, G.473
- Ligands: TPP.1
3 PLIP interactions:2 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:D.444, A:G.473, H2O.9
MG.7: 4 residues within 4Å:- Chain B: D.444, N.471, G.473
- Ligands: TPP.6
3 PLIP interactions:2 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:D.444, B:G.473, H2O.16
- 4 x ALK: methoxy-[(1~{R})-1-oxidanylethyl]phosphinic acid(Non-covalent)(Covalent)
ALK.3: 9 residues within 4Å:- Chain A: F.292, T.388, E.477, I.480
- Chain B: G.27, D.28, H.114, H.115
- Ligands: TPP.1
4 PLIP interactions:3 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:D.28, B:D.28
- Water bridges: B:F.29
- Hydrophobic interactions: A:T.388
ALK.4: 7 residues within 4Å:- Chain A: H.92, C.221, H.225, G.286, A.287, H.310, S.311
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:H.310, A:S.311
- Water bridges: A:D.312
ALK.8: 8 residues within 4Å:- Chain A: G.27, D.28, H.114, H.115
- Chain B: T.388, E.477, I.480
- Ligands: TPP.6
3 PLIP interactions:2 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:D.28, A:D.28
- Hydrophobic interactions: B:T.388
ALK.9: 7 residues within 4Å:- Chain B: H.92, C.221, H.225, G.286, A.287, H.310, S.311
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:H.310, B:S.311
- Water bridges: B:H.310, B:D.312
- 1 x ALU: METHYL HYDROGEN (S)-ACETYLPHOSPHONATE
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kutter, S. et al., Covalently Bound Substrate at the Regulatory Site of Yeast Pyruvate Decarboxylases Triggers Allosteric Enzyme Activation. J.Biol.Chem. (2009)
- Release Date
- 2009-01-27
- Peptides
- PYRUVATE DECARBOXYLASE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x TPP: THIAMINE DIPHOSPHATE(Non-covalent)
- 2 x MG: MAGNESIUM ION(Non-covalent)
- 4 x ALK: methoxy-[(1~{R})-1-oxidanylethyl]phosphinic acid(Non-covalent)(Covalent)
- 1 x ALU: METHYL HYDROGEN (S)-ACETYLPHOSPHONATE
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kutter, S. et al., Covalently Bound Substrate at the Regulatory Site of Yeast Pyruvate Decarboxylases Triggers Allosteric Enzyme Activation. J.Biol.Chem. (2009)
- Release Date
- 2009-01-27
- Peptides
- PYRUVATE DECARBOXYLASE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
D