- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.71 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x TPP: THIAMINE DIPHOSPHATE(Non-covalent)
- 2 x MG: MAGNESIUM ION(Non-covalent)
MG.2: 5 residues within 4Å:- Chain A: D.444, G.445, N.471, G.473
- Ligands: TPP.1
3 PLIP interactions:2 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:D.444, A:G.473, H2O.17
MG.6: 4 residues within 4Å:- Chain B: D.444, N.471, G.473
- Ligands: TPP.5
3 PLIP interactions:2 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:D.444, B:G.473, H2O.29
- 4 x PYR: PYRUVIC ACID(Non-covalent)
PYR.3: 8 residues within 4Å:- Chain A: G.413, I.476, E.477
- Chain B: G.27, A.28, H.114, H.115
- Ligands: TPP.1
6 PLIP interactions:4 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:A.28, A:E.477
- Water bridges: B:F.29
- Salt bridges: B:H.114, B:H.115
- Hydrophobic interactions: A:I.476
PYR.4: 7 residues within 4Å:- Chain A: H.92, C.221, H.225, G.286, A.287, H.310, S.311
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:H.310, A:S.311
- Salt bridges: A:H.92, A:H.225, A:H.310
PYR.7: 7 residues within 4Å:- Chain A: G.27, A.28, H.114, H.115
- Chain B: G.413, E.477
- Ligands: TPP.5
4 PLIP interactions:3 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:A.28, B:E.477
- Salt bridges: A:H.114, A:H.115
PYR.8: 7 residues within 4Å:- Chain B: H.92, C.221, H.225, G.286, A.287, H.310, S.311
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:H.310, B:S.311
- Salt bridges: B:H.92, B:H.225, B:H.310
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kutter, S. et al., Covalently Bound Substrate at the Regulatory Site of Yeast Pyruvate Decarboxylases Triggers Allosteric Enzyme Activation. J.Biol.Chem. (2009)
- Release Date
- 2009-01-27
- Peptides
- PYRUVATE DECARBOXYLASE ISOZYME 1: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.71 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x TPP: THIAMINE DIPHOSPHATE(Non-covalent)
- 2 x MG: MAGNESIUM ION(Non-covalent)
- 4 x PYR: PYRUVIC ACID(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kutter, S. et al., Covalently Bound Substrate at the Regulatory Site of Yeast Pyruvate Decarboxylases Triggers Allosteric Enzyme Activation. J.Biol.Chem. (2009)
- Release Date
- 2009-01-27
- Peptides
- PYRUVATE DECARBOXYLASE ISOZYME 1: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B