SMTL ID : 2vk5.1

THE STRUCTURE OF CLOSTRIDIUM PERFRINGENS NANI SIALIDASE AND ITS CATALYTIC INTERMEDIATES

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 0.97 Å

Oligo State

monomer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 8 residues within 4Å: Chain A: K.309, T.323, T.334, E.336, Y.389, K.395, Y.396, E.397 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:K.309, A:T.323, A:E.336, A:E.336, A:Y.389, A:E.397 Water bridges: A:T.334, A:E.336, A:K.395 GOL.2: 6 residues within 4Å: Chain A: E.336, K.337, D.338, T.339, N.340, E.397 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:K.337, A:T.339, A:T.339, A:N.340 Water bridges: A:T.339, A:E.397

2 x CA: CALCIUM ION(Non-covalent)

CA.3: 2 residues within 4Å: Chain A: D.273, W.331 6 PLIP interactions: 2 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:D.273, A:W.331, H2O.28, H2O.28, H2O.28, H2O.28 CA.4: 4 residues within 4Å: Chain A: D.54, D.56, D.77, Y.78 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.54, A:D.56, A:D.77, H2O.13, H2O.13

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Newstead, S.L. et al., The Structure of Clostridium Perfringens Nani Sialidase and its Catalytic Intermediates. J.Biol.Chem. (2008)

Release Date

2008-01-22

Peptides

EXO-ALPHA-SIALIDASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

EXO-ALPHA-SIALIDASE

Related Entries With Identical Sequence