SMTL ID : 2vkh.3 (2 other biounits)

CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF LETHAL TOXIN FROM CLOSTRIDIUM SORDELLII IN COMPLEX WITH UDP-GLC AND CALCIUM ION

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x CA: CALCIUM ION(Non-covalent)

CA.1: 4 residues within 4Å: Chain A: D.288, E.515, S.518 Ligands: UPG.2 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.288, A:E.515, A:S.518, H2O.2

1 x UPG: URIDINE-5'-DIPHOSPHATE-GLUCOSE(Non-covalent)

UPG.2: 18 residues within 4Å: Chain A: I.101, W.102, I.103, N.139, L.265, A.266, S.269, D.270, R.273, Y.284, D.286, V.287, D.288, N.384, Q.385, T.465, S.518 Ligands: CA.1 18 PLIP interactions: 18 interactions with chain A Hydrogen bonds: A:I.101, A:I.103, A:I.103, A:N.139, A:S.269, A:D.270, A:R.273, A:R.273, A:Y.284, A:D.286, A:V.287 Water bridges: A:I.101, A:D.286, A:D.288, A:D.288, A:D.288, A:Q.514 pi-Stacking: A:W.102

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ziegler, M.O.P. et al., Conformational Changes and Reaction of Clostridial Glycosylating Toxins. J.Mol.Biol. (2008)

Release Date

2008-03-18

Peptides

CYTOTOXIN L: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

CYTOTOXIN L

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