SMTL ID : 2vkm.1 (3 other biounits)

Crystal structure of GRL-8234 bound to BACE (Beta-secretase)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

monomer

Ligands

1 x BSD: N-{(1S,2R)-1-benzyl-2-hydroxy-3-[(3-methoxybenzyl)amino]propyl}-5-[methyl(methylsulfonyl)amino]-N'-[(1R)-1-phenylethyl]benzene-1,3-dicarboxamide

BSD.1: 26 residues within 4Å: Chain A: Q.16, G.17, Y.18, L.34, D.36, G.38, S.39, P.74, Y.75, T.76, Q.77, F.112, I.114, W.119, I.122, I.130, Y.202, D.232, S.233, G.234, T.235, T.236, N.237, R.239, S.329, A.339 26 PLIP interactions: 26 interactions with chain A Hydrophobic interactions: A:Y.18, A:L.34, A:L.34, A:Y.75, A:Y.75, A:Q.77, A:F.112, A:I.114, A:W.119, A:Y.202, A:A.339 Hydrogen bonds: A:S.39, A:T.76, A:Q.77, A:Q.77, A:G.234, A:G.234, A:T.236, A:N.237, A:N.237, A:S.329 Water bridges: A:S.40, A:T.76, A:R.132, A:T.236, A:R.239

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ghosh, A.K. et al., Potent Memapsin 2 (Beta-Secretase) Inhibitors: Design, Synthesis, Protein-Ligand X-Ray Structure, and in Vivo Evaluation. Bioorg.Med.Chem.Lett. (2008)

Release Date

2008-12-16

Peptides

BETA-SECRETASE 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

BETA-SECRETASE 1

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