SMTL ID : 2vle.2 (1 other biounit)

The structure of daidzin, a naturally occurring anti alcohol- addiction agent, in complex with human mitochondrial aldehyde dehydrogenase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-tetramer

Ligands

4 x DZN: DAIDZIN(Non-covalent)

DZN.1: 15 residues within 4Å: Chain A: V.114, M.118, F.164, L.167, M.168, W.171, T.238, F.286, F.290, C.295, C.296, C.297, D.451, V.452, F.453 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:W.171, A:F.290, A:D.451, A:F.453, A:F.453 Hydrogen bonds: A:F.453, A:F.453 pi-Stacking: A:F.164, A:F.453 DZN.2: 15 residues within 4Å: Chain B: V.114, M.118, F.164, L.167, M.168, W.171, T.238, F.286, F.290, C.295, C.296, C.297, D.451, V.452, F.453 11 PLIP interactions: 11 interactions with chain B Hydrophobic interactions: B:W.171, B:W.171, B:F.290, B:F.290, B:D.451, B:F.453, B:F.453 Hydrogen bonds: B:F.453, B:F.453 pi-Stacking: B:F.164, B:F.453 DZN.3: 14 residues within 4Å: Chain C: V.114, M.118, F.164, L.167, M.168, W.171, T.238, F.286, F.290, C.295, C.297, D.451, V.452, F.453 13 PLIP interactions: 13 interactions with chain C Hydrophobic interactions: C:W.171, C:W.171, C:F.290, C:F.290, C:D.451, C:F.453, C:F.453 Hydrogen bonds: C:F.453, C:F.453 Water bridges: C:E.262, C:C.296 pi-Stacking: C:F.164, C:F.453 DZN.4: 15 residues within 4Å: Chain D: V.114, M.118, F.164, L.167, M.168, W.171, T.238, F.286, F.290, C.295, C.296, C.297, D.451, V.452, F.453 14 PLIP interactions: 14 interactions with chain D Hydrophobic interactions: D:W.171, D:W.171, D:F.286, D:F.290, D:F.290, D:D.451, D:F.453, D:F.453 Hydrogen bonds: D:F.453, D:F.453 Water bridges: D:T.238, D:T.238 pi-Stacking: D:F.164, D:F.453

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lowe, E.D. et al., Structure of Daidzin, a Naturally Occurring Anti-Alcohol-Addiction Agent, in Complex with Human Mitochondrial Aldehyde Dehydrogenase. J.Med.Chem. (2008)

Release Date

2008-08-19

Peptides

ALDEHYDE DEHYDROGENASE, MITOCHONDRIAL: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
F

C
G

D
H

ALDEHYDE DEHYDROGENASE, MITOCHONDRIAL

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