SMTL ID : 2vmk.1

Crystal Structure of E. coli RNase E Apoprotein - Catalytic Domain

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.30 Å

Oligo State

homo-tetramer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: S.140, R.169, T.170 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.140, A:T.170 SO4.3: 3 residues within 4Å: Chain B: S.140, R.169, T.170 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:S.140, B:T.170, B:T.170 SO4.4: 3 residues within 4Å: Chain C: R.169, T.170, A.171 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:T.170, C:T.170, C:A.171 Salt bridges: C:R.169

2 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: C.404, C.407 Chain B: C.404, C.407 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Metal complexes: A:C.404, A:C.407, B:C.404, B:C.407 ZN.5: 5 residues within 4Å: Chain C: C.404, C.407 Chain D: C.404, R.406, C.407 4 PLIP interactions: 2 interactions with chain C, 2 interactions with chain D Metal complexes: C:C.404, C:C.407, D:C.404, D:C.407

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Koslover, D.J. et al., The Crystal Structure of the Escherichia Coli Rnase E Apoprotein and a Mechanism for RNA Degradation. Structure (2008)

Release Date

2008-07-22

Peptides

RIBONUCLEASE E: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

RIBONUCLEASE E