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SMTL ID : 2vmv.1
Crystal structure of F351GbsSHMT internal aldimine
Coordinates
PDB Format
Method
X-RAY DIFFRACTION 1.70 Å
Oligo State
homo-dimer
Ligands
2 x
PLP
:
PYRIDOXAL-5'-PHOSPHATE
(Covalent)
PLP.1:
16 residues within 4Å:
Chain A:
S.93
,
G.94
,
A.95
,
N.98
,
H.122
,
T.124
,
A.171
,
D.197
,
A.199
,
H.200
,
T.223
,
H.225
,
K.226
Chain B:
Y.51
,
G.256
,
G.257
15
PLIP interactions
:
12 interactions with chain A
,
3 interactions with chain B
Hydrophobic interactions:
A:T.223
,
A:K.226
Hydrogen bonds:
A:G.94
,
A:A.95
,
A:N.98
,
A:T.124
,
A:H.200
,
B:G.256
,
B:G.257
Water bridges:
A:S.93
,
A:S.93
,
A:T.221
,
B:Y.51
Salt bridges:
A:H.225
pi-Stacking:
A:H.122
PLP.3:
16 residues within 4Å:
Chain A:
Y.51
,
G.256
,
G.257
Chain B:
S.93
,
G.94
,
A.95
,
N.98
,
H.122
,
T.124
,
A.171
,
D.197
,
A.199
,
H.200
,
T.223
,
H.225
,
K.226
16
PLIP interactions
:
13 interactions with chain B
,
3 interactions with chain A
Hydrophobic interactions:
B:T.223
,
B:K.226
Hydrogen bonds:
B:G.94
,
B:A.95
,
B:N.98
,
B:T.124
,
B:H.200
,
B:K.226
,
A:G.256
,
A:G.257
Water bridges:
B:S.93
,
B:S.93
,
B:T.221
,
A:Y.51
Salt bridges:
B:H.225
pi-Stacking:
B:H.122
2 x
MPD
:
(4S)-2-METHYL-2,4-PENTANEDIOL
(Non-functional Binders)
MPD.2:
5 residues within 4Å:
Chain A:
Y.152
,
D.153
,
R.156
,
E.185
,
I.186
2
PLIP interactions
:
2 interactions with chain A
Hydrophobic interactions:
A:I.186
Water bridges:
A:K.182
MPD.4:
5 residues within 4Å:
Chain B:
Y.152
,
D.153
,
R.156
,
E.185
,
I.186
2
PLIP interactions
:
2 interactions with chain B
Hydrophobic interactions:
B:I.186
Water bridges:
B:K.182
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Pai, V.R. et al., Structural and Functional Studies of Bacillus Stearothermophilus Serine Hydroxymethyltransferase: The Role of Asn(341), Tyr(60) and Phe(351) in Tetrahydrofolate Binding. Biochem.J. (2009)
Release Date
2008-12-16
Peptides
SERINE HYDROXYMETHYLTRANSFERASE:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
A
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SERINE HYDROXYMETHYLTRANSFERASE
Toggle Identical (AB)
Related Entries With Identical Sequence
2vmw.1
|
2vmx.1
|
2vmy.1
|
2vmz.1
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