SMTL ID : 2vnl.1

MUTANT Y108Wdel OF THE HEADBINDING DOMAIN OF PHAGE P22 TAILSPIKE C- TERMINally fused to ISOLEUCINE ZIPPER pIIGCN4 (chimera II)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-trimer

Ligands

9 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 5 residues within 4Å: Chain A: I.65, V.73, Y.74, N.75, G.76 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.75, A:G.76 GOL.2: 7 residues within 4Å: Chain A: D.38, P.39, V.40, A.90, Y.92, Q.98, Y.101 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.92, A:Q.98 GOL.3: 4 residues within 4Å: Chain A: K.29, Y.31, V.40, Y.92 No protein-ligand interaction detected (PLIP) GOL.4: 5 residues within 4Å: Chain B: I.65, V.73, Y.74, N.75, G.76 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.75, B:G.76 GOL.5: 7 residues within 4Å: Chain B: D.38, P.39, V.40, A.90, Y.92, Q.98, Y.101 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Y.92, B:Q.98 GOL.6: 4 residues within 4Å: Chain B: K.29, Y.31, V.40, Y.92 No protein-ligand interaction detected (PLIP) GOL.7: 5 residues within 4Å: Chain C: I.65, V.73, Y.74, N.75, G.76 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:N.75, C:G.76 GOL.8: 7 residues within 4Å: Chain C: D.38, P.39, V.40, A.90, Y.92, Q.98, Y.101 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:Y.92, C:Q.98 GOL.9: 4 residues within 4Å: Chain C: K.29, Y.31, V.40, Y.92 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Seul, A. et al., Bacteriophage P22 Tailspike: Structure of the Complete Protein and Function of the Interdomain Linker. Acta Crystallogr.,Sect.D (2014)

Release Date

2009-02-10

Peptides

BIFUNCTIONAL TAIL PROTEIN, PIIGCN4: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

BIFUNCTIONAL TAIL PROTEIN, PIIGCN4