SMTL ID : 2vnu.1

CRYSTAL STRUCTURE OF SC RRP44

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 4 residues within 4Å: Chain A: A.9, A.10 Chain B: D.302, D.311 3 PLIP interactions: 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.302, B:D.311, H2O.186

1 x NA: SODIUM ION(Non-functional Binders)

NA.2: 5 residues within 4Å: Chain B: S.300, I.301, D.302, A.410, F.411 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.300, B:F.411

1 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)

1PE.3: 8 residues within 4Å: Chain B: A.315, K.317, G.321, W.323, D.391, M.431, G.432, A.435 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:A.315, B:K.317 Water bridges: B:K.317, B:K.317

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lorentzen, E. et al., Structure of the Active Subunit of the Yeast Exosome Core, Rrp44: Diverse Modes of Substrate Recruitment in the Rnase II Nuclease Family. Mol.Cell (2008)

Release Date

2008-04-08

Peptides

EXOSOME COMPLEX EXONUCLEASE RRP44: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

B
D

EXOSOME COMPLEX EXONUCLEASE RRP44