SMTL ID : 2vo9.1 (2 other biounits)

CRYSTAL STRUCTURE OF THE ENZYMATICALLY ACTIVE DOMAIN OF THE LISTERIA MONOCYTOGENES BACTERIOPHAGE 500 ENDOLYSIN PLY500

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.92, D.99, H.145 Ligands: SO4.2 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.92, A:D.99, A:D.99, A:H.145

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 7 residues within 4Å: Chain A: R.62, Q.67, T.83, S.90, H.92, H.145 Ligands: ZN.1 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:Q.67, A:T.83, A:S.90 Water bridges: A:N.84, A:D.142 Salt bridges: A:R.62, A:H.92 SO4.3: 3 residues within 4Å: Chain A: W.19, K.23, K.108 4 PLIP interactions: 4 interactions with chain A Water bridges: A:K.108, A:K.108 Salt bridges: A:K.23, A:K.108

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Korndorfer, I.P. et al., Structural Analysis of the L-Alanoyl-D-Glutamate Endopeptidase Domain of Listeria Bacteriophage Endolysin Ply500 Reveals a New Member of the Las Peptidase Family. Acta Crystallogr.,Sect.D (2008)

Release Date

2008-02-19

Peptides

L-ALANYL-D-GLUTAMATE PEPTIDASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

L-ALANYL-D-GLUTAMATE PEPTIDASE

Related Entries With Identical Sequence