SMTL ID : 2vop.1

Crystal structure of N-terminal domains of Human La protein complexed with RNA oligomer AUUUU

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

monomer

Ligands

1 x A- U- U- U- U: 5'-R(*AP*UP*UP*UP*UP)-3'(Non-covalent)

A-U-U-U-U.1: 14 residues within 4Å: Chain A: Q.19, Y.22, Y.23, D.32, K.33, F.34, K.53, F.54, N.55, R.56, L.123, K.127, N.138, I.139 Protein-ligand interaction information (PLIP) not available

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: K.15, H.18, K.127 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:H.18, A:K.127 SO4.3: 5 residues within 4Å: Chain A: Y.113, R.142, K.150, S.152, Y.187 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.113, A:S.152, A:Y.187 Salt bridges: A:R.142, A:K.150

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kotik-Kogan, O. et al., Structural Analysis Reveals Conformational Plasticity in the Recognition of RNA 3' Ends by the Human La Protein. Structure (2008)

Release Date

2008-05-06

Peptides

LUPUS LA PROTEIN: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

LUPUS LA PROTEIN

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