SMTL ID : 2vpa.1

High resolution crystal structure of the antibiotic resistance protein NimA from Deinococcus radiodurans

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.20 Å

Oligo State

homo-dimer

Ligands

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 6 residues within 4Å: Chain A: V.60, T.62, Y.91, T.93, R.100, H.107 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:V.60, A:T.62, A:Y.91, A:T.93 Hydrogen bonds: A:Y.91 Water bridges: A:T.62, A:W.64, A:W.64 Salt bridges: A:R.100, A:H.107 ACT.3: 6 residues within 4Å: Chain B: V.60, T.62, Y.91, T.93, R.100, H.107 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:V.60, B:T.62, B:Y.91, B:T.93 Hydrogen bonds: B:T.62 Water bridges: B:T.62, B:W.64, B:W.64 Salt bridges: B:R.100, B:H.107

2 x PYR: PYRUVIC ACID(Non-covalent)

PYR.2: 9 residues within 4Å: Chain A: A.79, H.92, L.156, V.160, F.161 Chain B: F.119, L.128, S.129, V.130 5 PLIP interactions: 2 interactions with chain B, 3 interactions with chain A Hydrophobic interactions: B:F.119, A:A.79 Water bridges: B:V.130, A:A.79 Salt bridges: A:H.92 PYR.4: 9 residues within 4Å: Chain A: F.119, L.128, S.129, V.130 Chain B: A.79, H.92, L.156, V.160, F.161 5 PLIP interactions: 2 interactions with chain A, 3 interactions with chain B Hydrophobic interactions: A:F.119, B:A.79 Water bridges: A:V.130, B:A.79 Salt bridges: B:H.92

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Leiros, H.-K.S. et al., High-Resolution Structure of the Antibiotic Resistance Protein Nima from Deinococcus Radiodurans. Acta Crystallogr.,Sect.F (2008)

Release Date

2008-08-19

Peptides

NIMA-RELATED PROTEIN: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

NIMA-RELATED PROTEIN

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