SMTL ID : 2vpq.1

Crystal structure of biotin carboxylase from S. aureus complexed with AMPPNP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

2 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.1: 24 residues within 4Å: Chain A: K.115, I.155, K.157, G.161, G.162, G.163, G.164, I.167, E.199, K.200, F.201, I.202, F.205, H.207, Q.231, M.234, E.274, I.276, M.287, E.288, N.290, R.292 Ligands: MG.2, MG.3 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:G.162, A:G.163, A:G.164, A:E.199, A:I.202, A:H.207, A:Q.231, A:Q.231, A:N.290, A:R.292 Water bridges: A:Q.231, A:M.234 Salt bridges: A:K.115, A:K.157 ANP.5: 24 residues within 4Å: Chain B: K.115, I.155, K.157, G.161, G.162, G.163, G.164, I.167, E.199, K.200, F.201, I.202, F.205, H.207, Q.231, M.234, E.274, I.276, M.287, E.288, N.290, R.292 Ligands: MG.6, MG.7 13 PLIP interactions: 13 interactions with chain B Hydrogen bonds: B:G.162, B:G.163, B:G.164, B:E.199, B:I.202, B:Q.231, B:N.290, B:R.292 Water bridges: B:K.115, B:K.115, B:Q.231 Salt bridges: B:K.115, B:K.157

4 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain A: E.274, E.288, N.290 Ligands: ANP.1 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.274, A:E.274, A:E.288, H2O.17 MG.3: 3 residues within 4Å: Chain A: E.288, N.290 Ligands: ANP.1 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.288, A:E.288, H2O.7, H2O.11 MG.6: 3 residues within 4Å: Chain B: E.274, E.288 Ligands: ANP.5 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.274, B:E.274, B:E.288, H2O.32 MG.7: 3 residues within 4Å: Chain B: E.288, N.290 Ligands: ANP.5 4 PLIP interactions: 2 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:E.288, B:E.288, H2O.23, H2O.26

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 3 residues within 4Å: Chain A: R.292, Q.294, V.295 Ligand excluded by PLIP CL.8: 3 residues within 4Å: Chain B: R.292, Q.294, V.295 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mochalkin, I. et al., Structural Evidence for Substrate-Induced Synergism and Half-Sites Reactivity in Biotin Carboxylase. Protein Sci. (2008)

Release Date

2008-09-09

Peptides

ACETYL-COA CARBOXYLASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

ACETYL-COA CARBOXYLASE