SMTL ID : 2vq0.3 (3 other biounits)

Capsid structure of Sesbania mosaic virus coat protein deletion mutant rCP(delta 48 to 59)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.60 Å

Oligo State

homo-18-mer

Ligands

18 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain A: Y.195, N.255, N.256 Chain C: D.134, D.137 3 PLIP interactions: 2 interactions with chain C, 1 interactions with chain A Metal complexes: C:D.134, C:D.137, A:Y.195 CA.2: 5 residues within 4Å: Chain A: D.134, D.137 Chain B: Y.195, N.255, N.256 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Metal complexes: A:D.134, A:D.137, B:Y.195 CA.3: 6 residues within 4Å: Chain B: D.134, D.137 Chain C: S.104, Y.195, N.255, N.256 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain C Metal complexes: B:D.134, B:D.137, C:Y.195, C:N.256 CA.4: 5 residues within 4Å: Chain D: Y.195, N.255, N.256 Chain F: D.134, D.137 3 PLIP interactions: 2 interactions with chain F, 1 interactions with chain D Metal complexes: F:D.134, F:D.137, D:Y.195 CA.5: 5 residues within 4Å: Chain D: D.134, D.137 Chain E: Y.195, N.255, N.256 3 PLIP interactions: 2 interactions with chain D, 1 interactions with chain E Metal complexes: D:D.134, D:D.137, E:Y.195 CA.6: 6 residues within 4Å: Chain E: D.134, D.137 Chain F: S.104, Y.195, N.255, N.256 4 PLIP interactions: 2 interactions with chain E, 2 interactions with chain F Metal complexes: E:D.134, E:D.137, F:Y.195, F:N.256 CA.7: 5 residues within 4Å: Chain G: Y.195, N.255, N.256 Chain I: D.134, D.137 3 PLIP interactions: 1 interactions with chain G, 2 interactions with chain I Metal complexes: G:Y.195, I:D.134, I:D.137 CA.8: 5 residues within 4Å: Chain G: D.134, D.137 Chain H: Y.195, N.255, N.256 3 PLIP interactions: 2 interactions with chain G, 1 interactions with chain H Metal complexes: G:D.134, G:D.137, H:Y.195 CA.9: 6 residues within 4Å: Chain H: D.134, D.137 Chain I: S.104, Y.195, N.255, N.256 4 PLIP interactions: 2 interactions with chain H, 2 interactions with chain I Metal complexes: H:D.134, H:D.137, I:Y.195, I:N.256 CA.10: 5 residues within 4Å: Chain J: Y.195, N.255, N.256 Chain L: D.134, D.137 3 PLIP interactions: 2 interactions with chain L, 1 interactions with chain J Metal complexes: L:D.134, L:D.137, J:Y.195 CA.11: 5 residues within 4Å: Chain J: D.134, D.137 Chain K: Y.195, N.255, N.256 3 PLIP interactions: 2 interactions with chain J, 1 interactions with chain K Metal complexes: J:D.134, J:D.137, K:Y.195 CA.12: 6 residues within 4Å: Chain K: D.134, D.137 Chain L: S.104, Y.195, N.255, N.256 4 PLIP interactions: 2 interactions with chain K, 2 interactions with chain L Metal complexes: K:D.134, K:D.137, L:Y.195, L:N.256 CA.13: 5 residues within 4Å: Chain M: Y.195, N.255, N.256 Chain O: D.134, D.137 3 PLIP interactions: 1 interactions with chain M, 2 interactions with chain O Metal complexes: M:Y.195, O:D.134, O:D.137 CA.14: 5 residues within 4Å: Chain M: D.134, D.137 Chain N: Y.195, N.255, N.256 3 PLIP interactions: 2 interactions with chain M, 1 interactions with chain N Metal complexes: M:D.134, M:D.137, N:Y.195 CA.15: 6 residues within 4Å: Chain N: D.134, D.137 Chain O: S.104, Y.195, N.255, N.256 4 PLIP interactions: 2 interactions with chain O, 2 interactions with chain N Metal complexes: O:Y.195, O:N.256, N:D.134, N:D.137 CA.16: 5 residues within 4Å: Chain P: Y.195, N.255, N.256 Chain R: D.134, D.137 3 PLIP interactions: 2 interactions with chain R, 1 interactions with chain P Metal complexes: R:D.134, R:D.137, P:Y.195 CA.17: 5 residues within 4Å: Chain P: D.134, D.137 Chain Q: Y.195, N.255, N.256 3 PLIP interactions: 2 interactions with chain P, 1 interactions with chain Q Metal complexes: P:D.134, P:D.137, Q:Y.195 CA.18: 6 residues within 4Å: Chain Q: D.134, D.137 Chain R: S.104, Y.195, N.255, N.256 4 PLIP interactions: 2 interactions with chain Q, 2 interactions with chain R Metal complexes: Q:D.134, Q:D.137, R:Y.195, R:N.256

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Anju, P. et al., Structure of Recombinant Capsids Formed by the Beta-Annulus Deletion Mutant-Rcp (Delta 48-59) of Sesbania Mosaic Virus. Virology (2008)

Release Date

2008-05-13

Peptides

COAT PROTEIN: ABCDEFGHIJKLMNOPQR

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
A

E
B

F
C

G
A

H
B

I
C

J
A

K
B

L
C

M
A

N
B

O
C

P
A

Q
B

R
C

COAT PROTEIN

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