SMTL ID : 2vqi.2 (1 other biounit)

Structure of the P pilus usher (PapC) translocation pore

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

homo-dimer

Ligands

4 x C8E: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE(Non-functional Binders)

C8E.1: 5 residues within 4Å: Chain A: W.353, R.381, L.395 Chain B: L.270, L.294 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:W.353, B:L.270 Hydrogen bonds: A:R.381, A:R.381 C8E.2: 5 residues within 4Å: Chain A: L.211, A.229, L.249, G.251 Ligands: LDA.3 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:L.211 C8E.4: 5 residues within 4Å: Chain A: L.270, L.294 Chain B: W.353, R.381, L.395 4 PLIP interactions: 1 interactions with chain A, 3 interactions with chain B Hydrophobic interactions: A:L.270, B:W.353 Hydrogen bonds: B:R.381, B:R.381 C8E.5: 5 residues within 4Å: Chain B: L.211, A.229, L.249, G.251 Ligands: LDA.6 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:L.211

2 x LDA: LAURYL DIMETHYLAMINE-N-OXIDE(Non-covalent)

LDA.3: 8 residues within 4Å: Chain A: L.95, A.115, L.117, S.213, G.214, V.227, F.228 Ligands: C8E.2 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.95, A:L.117 Hydrogen bonds: A:G.214, A:F.228 LDA.6: 8 residues within 4Å: Chain B: L.95, A.115, L.117, S.213, G.214, V.227, F.228 Ligands: C8E.5 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:L.95, B:L.117 Hydrogen bonds: B:G.214, B:F.228

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Remaut, H. et al., Fiber formation across the bacterial outer membrane by the chaperone/usher pathway. Cell (2008)

Release Date

2008-05-27

Peptides

OUTER MEMBRANE USHER PROTEIN PAPC: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
B

OUTER MEMBRANE USHER PROTEIN PAPC

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