SMTL ID : 2vqp.1

Structure of the matrix protein from human Respiratory Syncytial Virus

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 10 residues within 4Å: Chain A: Y.5, F.150, I.195, P.197, L.201, V.239, T.240, W.243, H.245 Ligands: ACT.11 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.5, A:V.239 Water bridges: A:H.245 GOL.2: 3 residues within 4Å: Chain A: T.129, Y.198, I.224 2 PLIP interactions: 2 interactions with chain A Water bridges: A:Y.198, A:I.224

7 x FMT: FORMIC ACID(Non-functional Binders)

FMT.3: 3 residues within 4Å: Chain A: V.154, T.241, N.242 2 PLIP interactions: 2 interactions with chain A Water bridges: A:N.242, A:N.242 FMT.4: 6 residues within 4Å: Chain A: W.36, C.92, S.199, D.226, G.228, A.229 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.226 FMT.5: 4 residues within 4Å: Chain A: K.8, H.10, E.11 Ligands: FMT.7 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.11 FMT.6: 3 residues within 4Å: Chain A: Q.41, S.42, S.43 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.41 FMT.7: 2 residues within 4Å: Chain A: L.9 Ligands: FMT.5 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.206, A:Q.222 FMT.8: 4 residues within 4Å: Chain A: H.10, K.122, S.123, M.126 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.123, A:S.123 Water bridges: A:K.122 FMT.9: 1 residues within 4Å: Chain A: A.83 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.83

3 x ACT: ACETATE ION(Non-functional Binders)

ACT.10: 6 residues within 4Å: Chain A: L.59, V.60, K.61, R.72, M.74, T.108 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:K.61, A:M.74 Hydrogen bonds: A:T.108 Water bridges: A:K.61, A:T.108 Salt bridges: A:K.61 ACT.11: 4 residues within 4Å: Chain A: T.240, T.241, W.243 Ligands: GOL.1 No protein-ligand interaction detected (PLIP) ACT.12: 4 residues within 4Å: Chain A: L.82, A.83, M.85, S.87 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.87 Water bridges: A:L.82, A:S.87

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Money, V.A. et al., Surface Features of a Mononegavirales Matrix Protein Indicate Sites of Membrane Interaction. Proc.Natl.Acad.Sci.USA (2009)

Release Date

2009-02-17

Peptides

MATRIX PROTEIN: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

MATRIX PROTEIN