SMTL ID : 2vr2.1

Human Dihydropyrimidinase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

homo-tetramer

Ligands

8 x ZN: ZINC ION(Non-covalent)

ZN.1: 6 residues within 4Å: Chain A: H.89, H.91, K.181, H.270, D.348 Ligands: ZN.2 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.89, A:H.91, A:D.348, H2O.1 ZN.2: 4 residues within 4Å: Chain A: K.181, H.214, H.270 Ligands: ZN.1 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:H.214, A:H.270 ZN.4: 6 residues within 4Å: Chain B: H.89, H.91, K.181, H.270, D.348 Ligands: ZN.5 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.89, B:H.91, B:D.348, H2O.1 ZN.5: 4 residues within 4Å: Chain B: K.181, H.214, H.270 Ligands: ZN.4 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:H.214, B:H.270 ZN.7: 6 residues within 4Å: Chain C: H.89, H.91, K.181, H.270, D.348 Ligands: ZN.8 4 PLIP interactions: 3 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:H.89, C:H.91, C:D.348, H2O.1 ZN.8: 4 residues within 4Å: Chain C: K.181, H.214, H.270 Ligands: ZN.7 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:H.214, C:H.270 ZN.10: 6 residues within 4Å: Chain D: H.89, H.91, K.181, H.270, D.348 Ligands: ZN.11 4 PLIP interactions: 3 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:H.89, D:H.91, D:D.348, H2O.1 ZN.11: 4 residues within 4Å: Chain D: K.181, H.214, H.270 Ligands: ZN.10 2 PLIP interactions: 2 interactions with chain D Metal complexes: D:H.214, D:H.270

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 3 residues within 4Å: Chain A: Q.107, K.110, F.475 Ligand excluded by PLIP CL.6: 3 residues within 4Å: Chain B: Q.107, K.110, F.475 Ligand excluded by PLIP CL.9: 3 residues within 4Å: Chain C: Q.107, K.110, F.475 Ligand excluded by PLIP CL.12: 3 residues within 4Å: Chain D: Q.107, K.110, F.475 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Welin, M. et al., The Crystal Structure of Human Dihydropyrimidinase. To be Published

Release Date

2008-04-01

Peptides

DIHYDROPYRIMIDINASE: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

DIHYDROPYRIMIDINASE