SMTL ID : 2vr6.1

Crystal Structure of G85R ALS mutant of Human Cu,Zn Superoxide Dismutase (CuZnSOD) at 1.3 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.30 Å

Oligo State

homo-dimer

Ligands

2 x CU: COPPER (II) ION(Non-covalent)

CU.1: 6 residues within 4Å: Chain A: H.46, H.48, H.63, H.120 Ligands: ZN.2, SO4.4 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.46, A:H.48, A:H.120 CU.7: 6 residues within 4Å: Chain B: H.46, H.48, V.118, H.120 Ligands: ZN.6, SO4.9 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.46, B:H.48, B:H.120

4 x ZN: ZINC ION(Non-covalent)

ZN.2: 6 residues within 4Å: Chain A: H.46, H.48, H.63, H.120 Ligands: CU.1, SO4.4 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.46, A:H.48, A:H.120 ZN.3: 4 residues within 4Å: Chain A: H.63, H.71, H.80, D.83 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:H.63, A:H.71, A:H.80, A:D.83, A:D.83 ZN.6: 6 residues within 4Å: Chain B: H.46, H.48, H.63, H.120 Ligands: CU.7, SO4.9 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.46, B:H.48, B:H.120 ZN.8: 4 residues within 4Å: Chain B: H.63, H.71, H.80, D.83 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:H.63, B:H.71, B:H.80, B:D.83, B:D.83

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 8 residues within 4Å: Chain A: H.46, H.48, H.63, H.120, T.137, R.143 Ligands: CU.1, ZN.2 13 PLIP interactions: 13 interactions with chain A Water bridges: A:T.137, A:T.137, A:N.139, A:G.141, A:R.143, A:R.143, A:R.143, A:R.143 Salt bridges: A:H.46, A:H.48, A:H.63, A:H.120, A:R.143 SO4.9: 8 residues within 4Å: Chain B: H.46, H.48, H.63, H.120, T.137, R.143 Ligands: ZN.6, CU.7 11 PLIP interactions: 11 interactions with chain B Hydrogen bonds: B:T.137 Water bridges: B:T.137, B:N.139, B:G.141, B:R.143, B:R.143 Salt bridges: B:H.46, B:H.48, B:H.63, B:H.120, B:R.143

1 x SCN: THIOCYANATE ION(Non-functional Binders)

SCN.5: 6 residues within 4Å: Chain A: V.87, T.88, D.96, V.97, S.98, I.99 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.88

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cao, X. et al., Structures of the G85R Variant of Sod1 in Familial Amyotrophic Lateral Sclerosis. J.Biol.Chem. (2008)

Release Date

2008-04-15

Peptides

SUPEROXIDE DISMUTASE [CU-ZN]: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
F

SUPEROXIDE DISMUTASE [CU-ZN]

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