SMTL ID : 2vr8.1

Crystal Structure of G85R ALS mutant of Human Cu,Zn Superoxide Dismutase (CuZnSOD) at 1.36 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.36 Å

Oligo State

homo-dimer

Ligands

2 x CU: COPPER (II) ION(Non-covalent)

CU.1: 7 residues within 4Å: Chain A: H.47, H.49, H.64, V.119, H.121 Ligands: ZN.2, SO4.4 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.47, A:H.49, A:H.121 CU.8: 7 residues within 4Å: Chain B: H.47, H.49, H.64, V.119, H.121 Ligands: ZN.9, SO4.11 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.47, B:H.49, B:H.121

6 x ZN: ZINC ION(Non-covalent)

ZN.2: 6 residues within 4Å: Chain A: H.47, H.49, H.64, H.121 Ligands: CU.1, SO4.4 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.47, A:H.49, A:H.121, H2O.11 ZN.3: 4 residues within 4Å: Chain A: H.64, H.72, H.81, D.84 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:H.64, A:H.72, A:H.81, A:D.84, A:D.84 ZN.5: 3 residues within 4Å: Chain A: E.25 Ligands: SCN.6, SCN.7 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.25, A:E.25 ZN.9: 6 residues within 4Å: Chain B: H.47, H.49, H.64, H.121 Ligands: CU.8, SO4.11 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.47, B:H.49, B:H.121 ZN.10: 4 residues within 4Å: Chain B: H.64, H.72, H.81, D.84 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:H.64, B:H.72, B:H.81, B:D.84, B:D.84 ZN.12: 3 residues within 4Å: Chain B: E.25 Ligands: SCN.13, SCN.14 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:E.25, B:E.25

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 8 residues within 4Å: Chain A: H.47, H.49, H.64, H.121, T.138, R.144 Ligands: CU.1, ZN.2 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:T.138 Water bridges: A:N.140, A:R.144, A:R.144, A:R.144, A:R.144, A:R.144, A:R.144 Salt bridges: A:H.49, A:H.64, A:H.121, A:R.144 SO4.11: 8 residues within 4Å: Chain B: H.47, H.49, H.64, H.121, T.138, R.144 Ligands: CU.8, ZN.9 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:T.138 Water bridges: B:N.140, B:R.144, B:R.144, B:R.144, B:R.144 Salt bridges: B:H.49, B:H.64, B:H.121, B:R.144

4 x SCN: THIOCYANATE ION(Non-functional Binders)

SCN.6: 3 residues within 4Å: Chain A: E.25 Ligands: ZN.5, SCN.7 No protein-ligand interaction detected (PLIP) SCN.7: 3 residues within 4Å: Chain A: E.25 Ligands: ZN.5, SCN.6 No protein-ligand interaction detected (PLIP) SCN.13: 3 residues within 4Å: Chain B: E.25 Ligands: ZN.12, SCN.14 No protein-ligand interaction detected (PLIP) SCN.14: 3 residues within 4Å: Chain B: E.25 Ligands: ZN.12, SCN.13 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cao, X. et al., Structures of the G85R Variant of Sod1 in Familial Amyotrophic Lateral Sclerosis. J.Biol.Chem. (2008)

Release Date

2008-04-08

Peptides

SUPEROXIDE DISMUTASE [CU-ZN]: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
F

SUPEROXIDE DISMUTASE [CU-ZN]

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