SMTL ID : 2vro.1

Crystal structure of aldehyde dehydrogenase from Burkholderia xenovorans LB400

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-dimer

Ligands

2 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NDP.1: 15 residues within 4Å: Chain A: I.156, F.159, K.183, G.215, S.216, S.217, L.221, F.232, S.235, T.238, T.241, L.242, D.260, N.347, F.403 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:T.186, A:G.215, A:S.217, A:S.217, A:T.238 Water bridges: A:F.159, A:F.159, A:P.184, A:Q.344, A:Q.344 Salt bridges: A:K.183 NDP.3: 15 residues within 4Å: Chain B: I.156, N.157, F.159, K.183, A.185, T.186, S.217, F.232, T.233, G.234, S.235, T.238, N.347, E.401, F.403 12 PLIP interactions: 12 interactions with chain B Hydrogen bonds: B:N.157, B:T.186, B:T.186, B:S.217, B:S.235, B:T.238 Water bridges: B:F.159, B:F.159, B:K.183, B:T.186, B:G.215 Salt bridges: B:K.183

1 x ETE: 2-{2-[2-2-(METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL(Non-covalent)

ETE.2: 11 residues within 4Å: Chain A: V.101, D.104, G.105, F.108, F.161, W.164, K.296, T.298, G.478, V.480, M.481 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:V.480

1 x P6G: HEXAETHYLENE GLYCOL(Non-functional Binders)

P6G.4: 16 residues within 4Å: Chain B: N.97, A.100, V.101, D.104, G.105, F.108, T.109, F.161, W.164, K.296, C.297, T.298, G.478, N.479, V.480, M.481 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:N.97, B:C.297, B:T.298, B:T.298

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bains, J. et al., Structural and Biochemical Characterization of a Novel Aldehyde Dehydrogenase Encoded by the Benzoate Oxidation (Box) Pathway in Burkholderia Xenovorans Lb400. J.Mol.Biol. (2008)

Release Date

2008-04-22

Peptides

ALDEHYDE DEHYDROGENASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

ALDEHYDE DEHYDROGENASE