SMTL ID : 2vrs.1

Structure of avian reovirus sigmaC117-326, C2 crystal form

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

homo-trimer

Ligands

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 4 residues within 4Å: Chain A: L.145, A.146, V.149, R.184 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.184 GOL.7: 5 residues within 4Å: Chain B: L.135, L.145, A.146, V.149, R.184 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.184 Water bridges: B:D.144, B:L.145 GOL.8: 6 residues within 4Å: Chain B: L.135, S.136, I.138, I.141, L.145, R.184 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:L.135, B:R.184, B:R.184

7 x ZN: ZINC ION(Non-covalent)

ZN.2: 3 residues within 4Å: Chain A: H.43 Chain B: H.43 Chain C: H.43 4 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A, 1 interactions with chain C, 1 Ligand-Water interactions Metal complexes: B:H.43, A:H.43, C:H.43, H2O.14 ZN.3: 1 residues within 4Å: Chain A: D.29 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.29, A:D.29, H2O.14 ZN.4: 1 residues within 4Å: Chain A: D.19 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.19, A:D.19 ZN.5: 2 residues within 4Å: Chain A: H.172, Y.174 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.172, A:Y.174, H2O.14 ZN.6: 3 residues within 4Å: Chain A: D.97, T.98, N.121 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.97, A:D.97 ZN.9: 2 residues within 4Å: Chain B: H.172, Y.174 3 PLIP interactions: 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.172, B:Y.174, H2O.26 ZN.13: 2 residues within 4Å: Chain C: H.172, Y.174 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:H.172, C:Y.174

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.10: 4 residues within 4Å: Chain B: Q.84, F.85, R.86, H.140 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.86 Salt bridges: B:H.140

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.11: 4 residues within 4Å: Chain A: N.23 Chain B: N.23 Chain C: I.20, N.23 Ligand excluded by PLIP CL.12: 4 residues within 4Å: Chain A: N.9 Chain B: N.9 Chain C: V.6, N.9 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Guardado-Calvo, P. et al., Crystallographic structure of the alpha-helical triple coiled-coil domain of avian reovirus S1133 fibre. J. Gen. Virol. (2009)

Release Date

2009-01-13

Peptides

SIGMA-C CAPSID PROTEIN: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

SIGMA-C CAPSID PROTEIN

Related Entries With Identical Sequence