SMTL ID : 2vs8.2 (2 other biounits)

The crystal structure of I-DmoI in complex with DNA and Mn

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

2 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 5 residues within 4Å: Chain A: G.21, E.118, N.130 Chain C: G.1 Chain D: C.15 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:G.21, A:E.118, A:E.118, H2O.4 MN.2: 4 residues within 4Å: Chain A: D.22, A.117 Chain B: A.14 Chain E: C.1 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.22, A:A.117, H2O.3

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.3: 7 residues within 4Å: Chain A: Y.115, K.121, L.179, P.187, P.188, E.189, A.190 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:P.187, A:E.189 Hydrogen bonds: A:E.189

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Marcaida, M.J. et al., Crystal Structure of I-Dmoi in Complex with its Target DNA Provides New Insights Into Meganuclease Engineering. Proc.Natl.Acad.Sci.USA (2008)

Release Date

2008-11-11

Peptides

HOMING ENDONUCLEASE I-DMOI: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
F

HOMING ENDONUCLEASE I-DMOI

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