SMTL ID : 2vsm.1

Nipah virus attachment glycoprotein in complex with human cell surface receptor ephrinB2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

hetero-1-1-mer

Ligands

1 x IPA: ISOPROPYL ALCOHOL(Non-functional Binders)

IPA.1: 9 residues within 4Å: Chain A: Y.267, T.275, M.276, I.277, I.298, S.299, R.300, N.322, F.338 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:I.298, A:N.322, A:F.338 Hydrogen bonds: A:Y.267, A:N.322 Water bridges: A:S.270

4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 5 residues within 4Å: Chain A: T.174, Y.176, K.228, N.230, S.232 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.174, A:K.228, A:D.233 Water bridges: A:T.174 NAG.3: 2 residues within 4Å: Chain A: R.308, N.342 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A Water bridges: B:K.82, A:R.308, A:N.342 NAG.4: 4 residues within 4Å: Chain A: N.291, W.292, R.293, N.294 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:N.291, A:W.292, A:N.294 Water bridges: A:N.291, A:N.291, A:R.293, A:N.294, A:N.294 NAG.5: 7 residues within 4Å: Chain B: N.9, S.10, S.11, K.37, V.43, G.44, E.47 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:N.9, B:S.11, B:G.44 Water bridges: B:N.9, B:G.44

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bowden, T.A. et al., Structural Basis of Nipah and Hendra Virus Attachment to Their Cell-Surface Receptor Ephrin-B2. Nat.Struct.Mol.Biol. (2008)

Release Date

2008-05-20

Peptides

HEMAGGLUTININ-NEURAMINIDASE: A
EPHRIN-B2: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

HEMAGGLUTININ-NEURAMINIDASE

EPHRIN-B2