SMTL ID : 2vuv.1

Crystal structure of Codakine at 1.3A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.30 Å

Oligo State

monomer

Ligands

1 x CA: CALCIUM ION(Non-covalent)

CA.1: 6 residues within 4Å: Chain A: E.93, N.95, E.101, N.112, D.113 Ligands: GOL.2 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:E.93, A:E.101, A:D.113, A:D.113

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 6 residues within 4Å: Chain A: E.93, N.95, E.101, N.112, D.113 Ligands: CA.1 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.93, A:N.95, A:E.101, A:N.112 Water bridges: A:S.97 GOL.3: 5 residues within 4Å: Chain A: K.20, N.56, G.57, D.58, F.62 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.20, A:F.62 Water bridges: A:S.18, A:D.58, A:S.121

1 x CIT: CITRIC ACID(Non-functional Binders)

CIT.4: 4 residues within 4Å: Chain A: N.100, R.115, C.116, H.117 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.100, A:R.115, A:C.116, A:H.117 Salt bridges: A:R.115, A:H.117

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gourdine, J.P. et al., High Affinity Interaction between a Bivalve C-Type Lectin and a Biantennary Complex-Type N-Glycan Revealed by Crystallography and Microcalorimetry. J.Biol.Chem. (2008)

Release Date

2008-08-05

Peptides

CODAKINE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

CODAKINE

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