SMTL ID : 2vve.1 (1 other biounit)

Crystal structure of the stem and receptor binding domain of the spike protein P1 from bacteriophage PM2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.77 Å

Oligo State

homo-tetramer

Ligands

4 x CA: CALCIUM ION(Non-covalent)

CA.1: 3 residues within 4Å: Chain A: S.150, D.212, D.214 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:S.150, A:D.212, A:D.214, H2O.10, H2O.10 CA.3: 3 residues within 4Å: Chain B: S.150, D.212, D.214 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:S.150, B:D.212, B:D.214, H2O.22, H2O.22 CA.5: 3 residues within 4Å: Chain C: S.150, D.212, D.214 5 PLIP interactions: 3 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:S.150, C:D.212, C:D.214, H2O.33, H2O.33 CA.7: 3 residues within 4Å: Chain D: S.150, D.212, D.214 5 PLIP interactions: 3 interactions with chain D, 2 Ligand-Water interactions Metal complexes: D:S.150, D:D.212, D:D.214, H2O.45, H2O.45

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 1 residues within 4Å: Chain A: R.24 Ligand excluded by PLIP CL.4: 1 residues within 4Å: Chain B: R.24 Ligand excluded by PLIP CL.6: 1 residues within 4Å: Chain C: R.24 Ligand excluded by PLIP CL.8: 1 residues within 4Å: Chain D: R.24 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Abrescia, N.G.A. et al., Insights Into Virus Evolution and Membrane Biogenesis from the Structure of the Marine Lipid-Containing Bacteriophage Pm2. Mol.Cell (2008)

Release Date

2008-09-16

Peptides

SPIKE PROTEIN P1: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

SPIKE PROTEIN P1

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