SMTL ID : 2vvi.1

IrisFP fluorescent protein in its green form, trans conformation

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-tetramer

Ligands

16 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: N.19, H.24, H.121 Chain C: R.104, R.119 Ligand excluded by PLIP SO4.2: 2 residues within 4Å: Chain A: D.202, K.203 Ligand excluded by PLIP SO4.3: 2 residues within 4Å: Chain A: K.182, G.183 Ligand excluded by PLIP SO4.5: 4 residues within 4Å: Chain A: H.74, H.217, S.218, G.219 Ligand excluded by PLIP SO4.6: 3 residues within 4Å: Chain A: R.149, D.150 Chain B: A.167 Ligand excluded by PLIP SO4.7: 4 residues within 4Å: Chain A: A.167 Chain B: V.148, R.149, D.150 Ligand excluded by PLIP SO4.8: 5 residues within 4Å: Chain B: G.18, N.19, H.24, H.121 Chain D: R.119 Ligand excluded by PLIP SO4.9: 2 residues within 4Å: Chain B: D.202, K.203 Ligand excluded by PLIP SO4.10: 2 residues within 4Å: Chain B: K.182, G.183 Ligand excluded by PLIP SO4.12: 4 residues within 4Å: Chain A: R.119 Chain C: N.19, H.24, H.121 Ligand excluded by PLIP SO4.13: 2 residues within 4Å: Chain C: D.202, K.203 Ligand excluded by PLIP SO4.14: 4 residues within 4Å: Chain C: Y.78, G.151, V.184, L.186 Ligand excluded by PLIP SO4.16: 4 residues within 4Å: Chain C: A.167 Chain D: V.148, R.149, D.150 Ligand excluded by PLIP SO4.17: 4 residues within 4Å: Chain B: R.119 Chain D: N.19, H.24, H.121 Ligand excluded by PLIP SO4.18: 2 residues within 4Å: Chain D: D.202, K.203 Ligand excluded by PLIP SO4.19: 3 residues within 4Å: Chain D: E.181, K.182, G.183 Ligand excluded by PLIP

4 x SO3: SULFITE ION(Non-covalent)

SO3.4: 6 residues within 4Å: Chain A: C.195, I.196, E.197, Y.211, H.213 Chain B: P.221 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:I.196, A:E.197, A:H.213 Salt bridges: A:E.197 SO3.11: 6 residues within 4Å: Chain A: P.221 Chain B: C.195, I.196, E.197, Y.211, H.213 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:I.196, B:H.213 Salt bridges: B:E.197 SO3.15: 6 residues within 4Å: Chain C: C.195, I.196, E.197, Y.211, E.212, H.213 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:E.197, C:E.197, C:H.213 Water bridges: C:H.213 Salt bridges: C:E.197 SO3.20: 6 residues within 4Å: Chain D: C.195, I.196, E.197, Y.211, E.212, H.213 6 PLIP interactions: 6 interactions with chain D Hydrogen bonds: D:E.197, D:H.213 Water bridges: D:I.196, D:I.196, D:E.197 Salt bridges: D:E.197

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Adam, V. et al., Structural Characterization of Irisfp, an Optical Highlighter Undergoing Multiple Photo-Induced Transformations. Proc.Natl.Acad.Sci.USA (2008)

Release Date

2008-11-11

Peptides

Green to red photoconvertible GFP-like protein EosFP: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Green to red photoconvertible GFP-like protein EosFP

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