SMTL ID : 2vw4.2 (1 other biounit)

NITRITE REDUCTASE FROM ALCALIGENES XYLOSOXIDANS - 2 OF 3

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-trimer

Ligands

6 x CU: COPPER (II) ION(Non-covalent)

CU.1: 5 residues within 4Å: Chain A: H.89, C.130, P.132, H.139, M.144 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.89, A:C.130, A:H.139 CU.2: 5 residues within 4Å: Chain A: D.92, H.94, H.129 Chain C: H.249, H.300 4 PLIP interactions: 2 interactions with chain A, 1 interactions with chain C, 1 Ligand-Water interactions Metal complexes: A:H.94, A:H.129, C:H.300, H2O.5 CU.5: 5 residues within 4Å: Chain B: H.89, C.130, P.132, H.139, M.144 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.89, B:C.130, B:H.139 CU.6: 5 residues within 4Å: Chain A: H.249, H.300 Chain B: D.92, H.94, H.129 4 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: B:H.94, B:H.129, A:H.300, H2O.16 CU.9: 5 residues within 4Å: Chain C: H.89, C.130, P.132, H.139, M.144 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:H.89, C:C.130, C:H.139 CU.10: 5 residues within 4Å: Chain B: H.249, H.300 Chain C: D.92, H.94, H.129 4 PLIP interactions: 1 interactions with chain B, 2 interactions with chain C, 1 Ligand-Water interactions Metal complexes: B:H.300, C:H.94, C:H.129, H2O.28

3 x ZN: ZINC ION(Non-functional Binders)

ZN.3: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) ZN.7: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) ZN.11: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

3 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.4: 6 residues within 4Å: Chain A: V.294, A.296, F.306, A.311, H.313 Chain B: L.100 No protein-ligand interaction detected (PLIP) PG4.8: 6 residues within 4Å: Chain B: V.294, A.296, F.306, A.311, H.313 Chain C: L.100 No protein-ligand interaction detected (PLIP) PG4.12: 6 residues within 4Å: Chain A: L.100 Chain C: V.294, A.296, F.306, A.311, H.313 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ellis, M.J. et al., On-Line Optical and X-Ray Spectroscopies with Crystallography: An Integrated Approach for Determining Metalloprotein Structures in Functionally Well Defined States. J.Synchrotron Radiat. (2008)

Release Date

2008-09-09

Peptides

DISSIMILATORY COPPER-CONTAINING NITRITE REDUCTASE: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
B

C
B

DISSIMILATORY COPPER-CONTAINING NITRITE REDUCTASE

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