- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.93 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x MG: MAGNESIUM ION(Non-covalent)
- 6 x PYR: PYRUVIC ACID(Non-covalent)
PYR.2: 10 residues within 4Å:- Chain A: R.74, Q.151, E.153, F.174, G.176, P.177, A.178, D.179, L.216
- Ligands: MG.1
9 PLIP interactions:9 interactions with chain A- Hydrophobic interactions: A:F.174, A:L.216
- Hydrogen bonds: A:R.74, A:Q.151, A:A.178, A:D.179, A:D.179, A:D.179
- Water bridges: A:R.74
PYR.5: 11 residues within 4Å:- Chain B: W.23, R.74, Q.151, E.153, F.174, G.176, P.177, A.178, D.179, L.216
- Ligands: MG.4
9 PLIP interactions:9 interactions with chain B- Hydrophobic interactions: B:W.23, B:F.174, B:L.216
- Hydrogen bonds: B:R.74, B:Q.151, B:A.178, B:D.179, B:D.179
- Water bridges: B:R.74
PYR.8: 10 residues within 4Å:- Chain C: R.74, Q.151, E.153, F.174, G.176, P.177, A.178, D.179, L.216
- Ligands: MG.7
8 PLIP interactions:8 interactions with chain C- Hydrophobic interactions: C:F.174, C:L.216
- Hydrogen bonds: C:R.74, C:Q.151, C:A.178, C:D.179, C:D.179
- Water bridges: C:R.74
PYR.12: 10 residues within 4Å:- Chain D: R.74, Q.151, E.153, F.174, G.176, P.177, A.178, D.179, L.216
- Ligands: MG.11
8 PLIP interactions:8 interactions with chain D- Hydrophobic interactions: D:F.174, D:L.216
- Hydrogen bonds: D:R.74, D:Q.151, D:A.178, D:D.179, D:D.179
- Water bridges: D:R.74
PYR.15: 11 residues within 4Å:- Chain E: W.23, R.74, Q.151, E.153, F.174, G.176, P.177, A.178, D.179, L.216
- Ligands: MG.14
10 PLIP interactions:10 interactions with chain E- Hydrophobic interactions: E:W.23, E:F.174, E:L.216
- Hydrogen bonds: E:R.74, E:Q.151, E:A.178, E:D.179, E:D.179, E:D.179
- Water bridges: E:R.74
PYR.18: 10 residues within 4Å:- Chain F: R.74, Q.151, E.153, F.174, G.176, P.177, A.178, D.179, L.216
- Ligands: MG.17
9 PLIP interactions:9 interactions with chain F- Hydrophobic interactions: F:F.174, F:L.216
- Hydrogen bonds: F:R.74, F:Q.151, F:A.178, F:D.179, F:D.179, F:D.179
- Water bridges: F:R.74
- 6 x PO4: PHOSPHATE ION(Non-functional Binders)
PO4.3: 6 residues within 4Å:- Chain A: T.27, T.28, A.29, D.56, H.59, Q.60
6 PLIP interactions:5 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:A.29, A:D.56, A:D.56, A:D.56
- Salt bridges: A:H.59
- Water bridges: B:Q.55
PO4.6: 6 residues within 4Å:- Chain B: T.27, T.28, A.29, D.56, H.59, Q.60
6 PLIP interactions:5 interactions with chain B, 1 interactions with chain C- Hydrogen bonds: B:T.27, B:A.29, B:D.56, B:D.56
- Salt bridges: B:H.59
- Water bridges: C:Q.55
PO4.9: 5 residues within 4Å:- Chain C: T.27, T.28, A.29, D.56, H.59
6 PLIP interactions:6 interactions with chain C- Hydrogen bonds: C:A.29, C:D.56, C:D.56, C:Q.60
- Water bridges: C:T.27
- Salt bridges: C:H.59
PO4.13: 6 residues within 4Å:- Chain D: T.27, T.28, A.29, D.56, H.59, Q.60
5 PLIP interactions:4 interactions with chain D, 1 interactions with chain E- Hydrogen bonds: D:A.29, D:D.56, D:D.56
- Salt bridges: D:H.59
- Water bridges: E:Q.55
PO4.16: 6 residues within 4Å:- Chain E: T.27, T.28, A.29, D.56, H.59, Q.60
6 PLIP interactions:5 interactions with chain E, 1 interactions with chain F- Hydrogen bonds: E:A.29, E:D.56, E:D.56, E:D.56
- Salt bridges: E:H.59
- Water bridges: F:Q.55
PO4.19: 5 residues within 4Å:- Chain F: T.27, T.28, A.29, D.56, H.59
7 PLIP interactions:6 interactions with chain F, 1 interactions with chain D- Hydrogen bonds: F:A.29, F:D.56, F:D.56, F:D.56, F:Q.60
- Salt bridges: F:H.59
- Water bridges: D:Q.55
- 2 x GOL: GLYCEROL(Non-functional Binders)
GOL.10: 7 residues within 4Å:- Chain C: E.77, G.78, S.79, P.97, M.98, Q.104, V.108
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:E.77, C:G.78, C:P.97
GOL.20: 7 residues within 4Å:- Chain F: E.77, G.78, S.79, P.97, M.98, Q.104, V.108
3 PLIP interactions:3 interactions with chain F- Hydrogen bonds: F:E.77, F:G.78, F:P.97
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Rea, D. et al., Crystal Structure and Functional Assignment of Yfau, a Metal Ion Dependent Class II Aldolase from Escherichia Coli K12. Biochemistry (2008)
- Release Date
- 2008-09-09
- Peptides
- YFAU, 2-KETO-3-DEOXY SUGAR ALDOLASE: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
AE
BF
C
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.93 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x MG: MAGNESIUM ION(Non-covalent)
- 6 x PYR: PYRUVIC ACID(Non-covalent)
- 6 x PO4: PHOSPHATE ION(Non-functional Binders)
- 2 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Rea, D. et al., Crystal Structure and Functional Assignment of Yfau, a Metal Ion Dependent Class II Aldolase from Escherichia Coli K12. Biochemistry (2008)
- Release Date
- 2008-09-09
- Peptides
- YFAU, 2-KETO-3-DEOXY SUGAR ALDOLASE: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
AE
BF
C