- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 0.82 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x PGH: PHOSPHOGLYCOLOHYDROXAMIC ACID(Non-covalent)
- 2 x PGA: 2-PHOSPHOGLYCOLIC ACID(Non-covalent)
PGA.2: 13 residues within 4Å:- Chain A: K.14, H.96, E.168, A.172, I.173, G.174, G.213, S.214, L.233, V.234, G.235, G.236
- Ligands: PGH.1
11 PLIP interactions:11 interactions with chain A- Hydrogen bonds: A:N.12, A:G.174, A:S.214, A:G.235, A:G.236
- Water bridges: A:G.213, A:V.215, A:A.237
- Salt bridges: A:K.14, A:K.14, A:H.96
PGA.10: 13 residues within 4Å:- Chain B: K.14, H.96, E.168, A.172, I.173, G.174, G.213, S.214, L.233, V.234, G.235, G.236
- Ligands: PGH.9
11 PLIP interactions:11 interactions with chain B- Hydrogen bonds: B:N.12, B:G.174, B:S.214, B:G.235, B:G.236
- Water bridges: B:G.213, B:V.215, B:A.237
- Salt bridges: B:K.14, B:K.14, B:H.96
- 10 x GOL: GLYCEROL(Non-functional Binders)
GOL.3: 11 residues within 4Å:- Chain A: F.46, N.67, G.77, E.78, R.99
- Chain B: F.46, N.67, G.77, E.78, R.99
- Ligands: GOL.11
10 PLIP interactions:3 interactions with chain B, 7 interactions with chain A- Hydrogen bonds: B:N.67, A:N.67, A:G.77, A:G.77
- Water bridges: B:R.99, B:R.99, A:E.78, A:E.78, A:R.99, A:R.99
GOL.4: 3 residues within 4Å:- Chain A: W.194, N.198
- Ligands: GOL.5
No protein-ligand interaction detected (PLIP)GOL.5: 5 residues within 4Å:- Chain A: L.145, S.146, S.149, W.194
- Ligands: GOL.4
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:S.149, A:S.149
GOL.6: 1 residues within 4Å:- Chain A: G.176
3 PLIP interactions:3 interactions with chain A- Water bridges: A:G.176, A:N.216, A:N.216
GOL.7: 2 residues within 4Å:- Chain A: T.180, E.182
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:T.180, A:E.182
- Water bridges: A:E.182, A:E.182
GOL.11: 11 residues within 4Å:- Chain A: F.46, N.67, G.77, E.78, R.99
- Chain B: F.46, N.67, G.77, E.78, R.99
- Ligands: GOL.3
10 PLIP interactions:6 interactions with chain B, 4 interactions with chain A- Hydrogen bonds: B:N.67, B:G.77, B:G.77, A:N.67
- Water bridges: B:V.79, B:R.99, B:R.99, A:E.78, A:R.99, A:R.99
GOL.12: 3 residues within 4Å:- Chain B: W.194, N.198
- Ligands: GOL.13
No protein-ligand interaction detected (PLIP)GOL.13: 5 residues within 4Å:- Chain B: L.145, S.146, S.149, W.194
- Ligands: GOL.12
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:S.149, B:S.149
GOL.14: 1 residues within 4Å:- Chain B: G.176
3 PLIP interactions:3 interactions with chain B- Water bridges: B:G.176, B:N.216, B:N.216
GOL.15: 2 residues within 4Å:- Chain B: T.180, E.182
2 PLIP interactions:2 interactions with chain B- Water bridges: B:E.182, B:E.182
- 2 x ACT: ACETATE ION(Non-functional Binders)
ACT.8: 4 residues within 4Å:- Chain A: P.241, E.242, R.244, D.245
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:E.242
- Hydrogen bonds: A:D.245
- Water bridges: A:E.242
- Salt bridges: A:R.244
ACT.16: 4 residues within 4Å:- Chain B: P.241, E.242, R.244, D.245
4 PLIP interactions:4 interactions with chain B- Hydrophobic interactions: B:E.242
- Hydrogen bonds: B:D.245
- Water bridges: B:E.242
- Salt bridges: B:R.244
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Alahuhta, M. et al., Atomic Resolution Crystallography of a Complex of Triosephosphate Isomerase with a Reaction-Intermediate Analog: New Insight in the Proton Transfer Reaction Mechanism. Proteins (2010)
- Release Date
- 2009-07-14
- Peptides
- TRIOSEPHOSPHATE ISOMERASE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 0.82 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x PGH: PHOSPHOGLYCOLOHYDROXAMIC ACID(Non-covalent)
- 2 x PGA: 2-PHOSPHOGLYCOLIC ACID(Non-covalent)
- 10 x GOL: GLYCEROL(Non-functional Binders)
- 2 x ACT: ACETATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Alahuhta, M. et al., Atomic Resolution Crystallography of a Complex of Triosephosphate Isomerase with a Reaction-Intermediate Analog: New Insight in the Proton Transfer Reaction Mechanism. Proteins (2010)
- Release Date
- 2009-07-14
- Peptides
- TRIOSEPHOSPHATE ISOMERASE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A