SMTL ID : 2vyr.1

Structure of human MDM4 N-terminal domain bound to a single domain antibody

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

hetero-4-8-mer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: R.72, Q.73, S.74 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.73, A:S.74 Salt bridges: A:R.72 SO4.2: 3 residues within 4Å: Chain B: R.72, Q.73, S.74 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Q.73, B:S.74 Salt bridges: B:R.72 SO4.3: 4 residues within 4Å: Chain B: Q.56 Chain F: N.52, R.54, Y.56 3 PLIP interactions: 2 interactions with chain F, 1 interactions with chain B Hydrogen bonds: F:N.52, F:Y.56, B:Q.56 SO4.4: 4 residues within 4Å: Chain D: Q.56 Chain H: N.52, R.54, Y.56 7 PLIP interactions: 6 interactions with chain H, 1 interactions with chain D Hydrogen bonds: H:N.52, H:Y.56, D:Q.56 Water bridges: H:R.54, H:R.54, H:T.57 Salt bridges: H:R.54

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yu, G.W. et al., Structure of Human Mdm4 N-Terminal Domain Bound to a Single-Domain Antibody. J.Mol.Biol. (2009)

Release Date

2008-11-25

Peptides

MDM4 PROTEIN: ABCD
HUMAN SINGLE DOMAIN ANTIBODY: EFGHIJKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

MDM4 PROTEIN

HUMAN SINGLE DOMAIN ANTIBODY