SMTL ID : 2vzz.1

Crystal structure of Rv0802c from Mycobacterium tuberculosis in Complex with Succinyl-CoA

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-tetramer

Ligands

4 x SCA: SUCCINYL-COENZYME A(Non-covalent)

SCA.1: 27 residues within 4Å: Chain A: V.38, P.45, F.46, Q.94, S.109, G.110, S.111, W.112, L.113, Q.118, G.119, H.120, G.121, Y.122, G.123, T.124, M.126, R.127, S.145, R.146, N.151, P.152, A.153, S.154, A.156, V.157, R.160 21 PLIP interactions: 21 interactions with chain A Hydrophobic interactions: A:P.45, A:F.46 Hydrogen bonds: A:Q.94, A:S.111, A:S.111, A:L.113, A:Q.118, A:G.119, A:H.120, A:G.121, A:Y.122, A:G.123, A:T.124, A:T.124, A:S.145, A:N.151 Water bridges: A:S.111, A:S.111, A:G.119 Salt bridges: A:R.127, A:R.160 SCA.2: 27 residues within 4Å: Chain B: V.38, P.45, F.46, Q.94, S.109, G.110, S.111, W.112, L.113, Q.118, G.119, H.120, G.121, Y.122, G.123, T.124, M.126, R.127, S.145, R.146, N.151, P.152, A.153, S.154, A.156, V.157, R.160 21 PLIP interactions: 21 interactions with chain B Hydrophobic interactions: B:P.45, B:F.46 Hydrogen bonds: B:Q.94, B:S.111, B:S.111, B:L.113, B:G.119, B:G.121, B:Y.122, B:G.123, B:T.124, B:T.124, B:S.145, B:N.151, B:R.160 Water bridges: B:S.111, B:H.120, B:H.120 Salt bridges: B:R.127, B:R.160, B:R.160 SCA.3: 26 residues within 4Å: Chain C: V.38, P.45, F.46, Q.94, S.109, G.110, S.111, W.112, L.113, Q.118, G.119, H.120, G.121, Y.122, G.123, T.124, R.127, S.145, R.146, N.151, P.152, A.153, S.154, A.156, V.157, R.160 21 PLIP interactions: 21 interactions with chain C Hydrophobic interactions: C:P.45, C:F.46, C:L.113 Hydrogen bonds: C:Q.94, C:S.111, C:S.111, C:L.113, C:Q.118, C:G.119, C:G.119, C:G.121, C:Y.122, C:G.123, C:T.124, C:S.145, C:N.151 Water bridges: C:S.111, C:H.120, C:H.120 Salt bridges: C:R.127, C:R.160 SCA.4: 27 residues within 4Å: Chain D: V.38, P.45, F.46, Q.94, S.109, G.110, S.111, W.112, L.113, Q.118, G.119, H.120, G.121, Y.122, G.123, T.124, M.126, R.127, S.145, R.146, N.151, P.152, A.153, S.154, A.156, V.157, R.160 20 PLIP interactions: 20 interactions with chain D Hydrophobic interactions: D:P.45, D:F.46 Hydrogen bonds: D:Q.94, D:S.111, D:S.111, D:L.113, D:G.119, D:G.121, D:G.123, D:T.124, D:S.145, D:N.151 Water bridges: D:S.111, D:G.119, D:H.120, D:H.120, D:A.156, D:R.160 Salt bridges: D:R.127, D:R.160

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vetting, M.W. et al., Rv0802C from Mycobacterium Tuberculosis: The First Structure of a Succinyltransferase with the Gnat Fold. Acta Crystallogr.,Sect.F (2008)

Release Date

2009-04-07

Peptides

RV0802C: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

RV0802C

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