- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.92 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x MG: MAGNESIUM ION(Non-covalent)
- 3 x BVP: (E)-5-(2-BROMOVINYL)-2'-DEOXYURIDINE-5'-MONOPHOSPHATE(Non-covalent)
BVP.3: 18 residues within 4Å:- Chain A: D.13, F.38, R.41, L.53, V.64, N.65, F.68, R.72, R.93, S.97, G.98, Y.101, A.102, K.105, E.142, Y.144
- Ligands: MG.1, MG.2
12 PLIP interactions:12 interactions with chain A- Hydrophobic interactions: A:F.68, A:Y.101, A:Y.101
- Hydrogen bonds: A:R.72, A:R.72, A:Y.101, A:E.142
- Salt bridges: A:K.17, A:R.41, A:R.93
- pi-Stacking: A:F.68
- Halogen bonds: A:N.65
BVP.7: 19 residues within 4Å:- Chain B: D.13, F.38, P.39, R.41, L.53, V.64, N.65, F.68, R.72, R.93, S.97, G.98, Y.101, A.102, K.105, E.142, Y.144
- Ligands: MG.5, MG.6
12 PLIP interactions:12 interactions with chain B- Hydrophobic interactions: B:F.68, B:Y.101, B:Y.101
- Hydrogen bonds: B:R.72, B:R.72, B:Y.101, B:Y.101
- Salt bridges: B:K.17, B:R.41, B:R.93
- pi-Stacking: B:F.68
- Halogen bonds: B:N.65
BVP.9: 7 residues within 4Å:- Chain A: N.60, H.62, I.63
- Chain B: L.66, A.70, W.73, S.117
7 PLIP interactions:4 interactions with chain B, 3 interactions with chain A- Hydrophobic interactions: B:W.73, A:H.62
- Hydrogen bonds: B:S.117, A:N.60
- pi-Stacking: B:W.73, B:W.73
- Salt bridges: A:H.62
- 2 x SO4: SULFATE ION(Non-functional Binders)
SO4.4: 6 residues within 4Å:- Chain A: K.14, S.15, G.16, K.17, T.18
- Ligands: MG.1
8 PLIP interactions:8 interactions with chain A- Hydrogen bonds: A:K.14, A:S.15, A:S.15, A:G.16, A:K.17, A:T.18, A:T.18
- Salt bridges: A:K.17
SO4.8: 7 residues within 4Å:- Chain B: D.13, K.14, S.15, G.16, K.17, T.18
- Ligands: MG.5
7 PLIP interactions:7 interactions with chain B- Hydrogen bonds: B:K.14, B:S.15, B:G.16, B:K.17, B:T.18, B:T.18
- Salt bridges: B:K.17
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Caillat, C. et al., Crystal Structure of Poxvirus Thymidylate Kinase: An Unexpected Dimerization Has Implications for Antiviral Therapy. Proc.Natl.Acad.Sci.USA (2008)
- Release Date
- 2008-10-21
- Peptides
- THYMIDYLATE KINASE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.92 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x MG: MAGNESIUM ION(Non-covalent)
- 3 x BVP: (E)-5-(2-BROMOVINYL)-2'-DEOXYURIDINE-5'-MONOPHOSPHATE(Non-covalent)
- 2 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Caillat, C. et al., Crystal Structure of Poxvirus Thymidylate Kinase: An Unexpected Dimerization Has Implications for Antiviral Therapy. Proc.Natl.Acad.Sci.USA (2008)
- Release Date
- 2008-10-21
- Peptides
- THYMIDYLATE KINASE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B