SMTL ID : 2w12.1

High-resolution crystal structure of the P-I snake venom metalloproteinase BaP1 in complex with a peptidomimetic: insights into inhibitor binding

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.46 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.142, H.146, H.152 Ligands: WR2.2 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.142, A:H.146, A:H.152

1 x WR2: (2R,3R)-N^1^-[(1S)-2,2-DIMETHYL-1-(METHYLCARBAMOYL)PROPYL]-N^4^-HYDROXY-2-(2-METHYLPROPYL)-3-{[(1,3-THIAZOL-2-YLCARBONYL)AMINO]METHYL}BUTANEDIAMIDE

WR2.2: 19 residues within 4Å: Chain A: S.71, S.72, G.105, N.106, T.107, I.108, G.109, R.110, T.139, H.142, E.143, H.146, H.152, A.167, S.168, V.169, L.170 Ligands: ZN.1, GOL.3 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:N.106, A:I.108, A:I.108, A:T.139, A:V.169 Hydrogen bonds: A:N.106, A:I.108, A:G.109, A:G.109, A:S.168, A:L.170 Water bridges: A:T.107 pi-Cation interactions: A:R.110

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 5 residues within 4Å: Chain A: R.110, A.111, E.143, H.146 Ligands: WR2.2 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.110, A:R.110, A:A.111, A:A.111

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lingott, T.J. et al., High-Resolution Crystal Structure of the Snake Venom Metalloproteinase Bap1 Complexed with a Peptidomimetic: Insight Into Inhibitor Binding. Biochemistry (2009)

Release Date

2009-06-16

Peptides

ZINC METALLOPROTEINASE BAP1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

ZINC METALLOPROTEINASE BAP1

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