SMTL ID : 2w1a.1

Non-covalent complex between dahp synthase and chorismate mutase from Mycobacterium tuberculosis with bound tsa

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

hetero-oligomer

Ligands

4 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 4 residues within 4Å: Chain A: C.97, H.379, E.421, D.451 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:C.97, A:H.379, A:E.421, A:E.421, A:D.451 MN.8: 4 residues within 4Å: Chain B: C.97, H.379, E.421, D.451 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:C.97, B:H.379, B:E.421, B:E.421, B:D.451 MN.13: 4 residues within 4Å: Chain E: C.97, H.379, E.421, D.451 5 PLIP interactions: 5 interactions with chain E Metal complexes: E:C.97, E:H.379, E:E.421, E:E.421, E:D.451 MN.20: 4 residues within 4Å: Chain F: C.97, H.379, E.421, D.451 5 PLIP interactions: 5 interactions with chain F Metal complexes: F:C.97, F:H.379, F:E.421, F:E.421, F:D.451

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain A: G.292, E.293, K.316, R.347, H.379 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:E.293 Water bridges: A:E.258, A:W.290 Salt bridges: A:K.316, A:R.347, A:H.379 SO4.6: 5 residues within 4Å: Chain B: G.292, E.293, K.316, R.347, H.379 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:E.293 Water bridges: B:K.316 Salt bridges: B:K.316, B:R.347, B:H.379 SO4.7: 3 residues within 4Å: Chain B: R.33, E.63, R.266 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:R.266 Water bridges: B:R.59 Salt bridges: B:R.33, B:R.266 SO4.14: 5 residues within 4Å: Chain E: G.292, E.293, K.316, R.347, H.379 6 PLIP interactions: 6 interactions with chain E Hydrogen bonds: E:E.293 Water bridges: E:E.258, E:W.290 Salt bridges: E:K.316, E:R.347, E:H.379 SO4.18: 5 residues within 4Å: Chain F: G.292, E.293, K.316, R.347, H.379 5 PLIP interactions: 5 interactions with chain F Hydrogen bonds: F:E.293 Water bridges: F:K.316 Salt bridges: F:K.316, F:R.347, F:H.379 SO4.19: 3 residues within 4Å: Chain F: R.33, E.63, R.266 5 PLIP interactions: 5 interactions with chain F Hydrogen bonds: F:E.63, F:R.266 Water bridges: F:R.59 Salt bridges: F:R.33, F:R.266

2 x CE1: O-DODECANYL OCTAETHYLENE GLYCOL(Non-covalent)

CE1.3: 16 residues within 4Å: Chain A: F.101, M.102, N.104, T.105, V.180, R.181, Y.183, A.184, N.185 Chain B: V.15, I.17, S.64, V.65, A.184, N.185, A.188 8 PLIP interactions: 5 interactions with chain A, 3 interactions with chain B Hydrophobic interactions: A:V.180, A:Y.183, A:A.184, B:V.15, B:I.17, B:A.188 Hydrogen bonds: A:R.181, A:N.185 CE1.15: 16 residues within 4Å: Chain E: F.101, M.102, N.104, T.105, V.180, R.181, Y.183, A.184, N.185 Chain F: V.15, I.17, S.64, V.65, A.184, N.185, A.188 8 PLIP interactions: 5 interactions with chain E, 3 interactions with chain F Hydrophobic interactions: E:V.180, E:Y.183, E:A.184, F:V.15, F:I.17, F:A.188 Hydrogen bonds: E:R.181, E:N.185

2 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.4: 10 residues within 4Å: Chain A: T.100, F.101, M.102, Y.157, D.160, G.164, F.165, R.178, R.181 Chain B: P.18 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:F.101, A:M.102, A:F.165, A:R.178, A:R.178, A:R.181, A:R.181 PG4.16: 10 residues within 4Å: Chain E: T.100, F.101, M.102, Y.157, D.160, G.164, F.165, R.178, R.181 Chain F: P.18 8 PLIP interactions: 8 interactions with chain E Hydrogen bonds: E:F.101, E:M.102, E:Y.157, E:F.165, E:R.178, E:R.178, E:R.181, E:R.181

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 4 residues within 4Å: Chain A: D.148, R.155, R.158, H.174 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.148, A:R.155, A:R.158, A:R.158 GOL.9: 4 residues within 4Å: Chain B: R.145, S.146, A.147, R.294 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:S.146, B:A.147, B:R.294 GOL.10: 3 residues within 4Å: Chain B: P.27, L.28, R.33 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:L.28, B:R.33 GOL.17: 4 residues within 4Å: Chain E: D.148, R.155, R.158, H.174 4 PLIP interactions: 4 interactions with chain E Hydrogen bonds: E:D.148, E:R.155, E:R.158, E:R.158 GOL.21: 4 residues within 4Å: Chain F: R.145, S.146, A.147, R.294 3 PLIP interactions: 3 interactions with chain F Hydrogen bonds: F:S.146, F:A.147, F:R.294 GOL.22: 3 residues within 4Å: Chain F: P.27, L.28, R.33 2 PLIP interactions: 2 interactions with chain F Hydrogen bonds: F:L.28, F:R.33

4 x TSA: 8-HYDROXY-2-OXA-BICYCLO[3.3.1]NON-6-ENE-3,5-DICARBOXYLIC ACID(Non-covalent)

TSA.11: 13 residues within 4Å: Chain C: R.35, S.39, I.42, R.46, L.54, V.55, R.58, E.59, V.62, L.81, R.85 Chain G: R.18, I.21 18 PLIP interactions: 16 interactions with chain C, 2 interactions with chain G Hydrophobic interactions: C:R.58, C:E.59, C:L.81, C:R.85, G:I.21 Hydrogen bonds: C:S.39, C:S.39, C:R.46, C:V.55, C:V.55, C:E.59 Water bridges: C:G.43, C:R.58, C:R.58 Salt bridges: C:R.35, C:R.46, C:R.58, G:R.18 TSA.12: 13 residues within 4Å: Chain D: R.35, S.39, I.42, R.46, L.54, V.55, R.58, E.59, V.62, L.81, R.85 Chain H: R.18, I.21 13 PLIP interactions: 12 interactions with chain D, 1 interactions with chain H Hydrophobic interactions: D:R.58, D:E.59, D:L.81, D:R.85 Hydrogen bonds: D:S.39, D:R.46, D:V.55, D:V.55 Water bridges: D:R.58 Salt bridges: D:R.35, D:R.46, D:R.58, H:R.18 TSA.23: 13 residues within 4Å: Chain C: R.18, I.21 Chain G: R.35, S.39, I.42, R.46, L.54, V.55, R.58, E.59, V.62, L.81, R.85 17 PLIP interactions: 15 interactions with chain G, 2 interactions with chain C Hydrophobic interactions: G:R.58, G:E.59, G:L.81, G:R.85, C:I.21 Hydrogen bonds: G:S.39, G:S.39, G:R.46, G:V.55, G:V.55 Water bridges: G:G.43, G:R.58, G:R.58 Salt bridges: G:R.35, G:R.46, G:R.58, C:R.18 TSA.24: 13 residues within 4Å: Chain D: R.18, I.21 Chain H: R.35, S.39, I.42, R.46, L.54, V.55, R.58, E.59, V.62, L.81, R.85 14 PLIP interactions: 13 interactions with chain H, 1 interactions with chain D Hydrophobic interactions: H:R.58, H:E.59, H:L.81, H:R.85 Hydrogen bonds: H:S.39, H:R.46, H:V.55, H:V.55, H:E.59 Water bridges: H:R.58 Salt bridges: H:R.35, H:R.46, H:R.58, D:R.18

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sasso, S. et al., Structure and Function of a Complex between Chorismate Mutase and Dahp Synthase: Efficiency Boost for the Junior Partner. Embo J. (2009)

Release Date

2009-07-07

Peptides

3-DEOXY-D-ARABINO-HEPTULOSONATE 7-PHOSPHATE SYNTHASE AROG: ABEF
CHORISMATE MUTASE: CDGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

E
A

F
B

C
C

D
D

G
C

H
D

3-DEOXY-D-ARABINO-HEPTULOSONATE 7-PHOSPHATE SYNTHASE AROG

CHORISMATE MUTASE

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