SMTL ID : 2w2c.1

STRUCTURE OF THE TETRADECAMERIC OLIGOMERISATION DOMAIN OF CALCIUM- CALMODULIN DEPENDENT PROTEIN KINASE II DELTA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-14-mer

Ligands

14 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 6 residues within 4Å: Chain A: I.30, Y.38, R.102, R.122, F.136, R.138 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:F.136 Hydrogen bonds: A:Y.38, A:Y.38, A:R.102 Salt bridges: A:R.122, A:R.138 ACT.2: 7 residues within 4Å: Chain B: I.30, Y.38, H.64, R.102, R.122, F.136, R.138 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:F.136 Hydrogen bonds: B:R.102 Salt bridges: B:R.122, B:R.138 ACT.4: 7 residues within 4Å: Chain C: I.30, Y.38, H.64, R.102, R.122, F.136, R.138 5 PLIP interactions: 5 interactions with chain C Hydrophobic interactions: C:F.136 Hydrogen bonds: C:Y.38 Salt bridges: C:R.102, C:R.122, C:R.138 ACT.5: 6 residues within 4Å: Chain D: I.30, Y.38, R.102, R.122, F.136, R.138 4 PLIP interactions: 4 interactions with chain D Hydrophobic interactions: D:F.136 Salt bridges: D:R.102, D:R.122, D:R.138 ACT.6: 7 residues within 4Å: Chain E: I.30, Y.38, H.64, R.102, R.122, F.136, R.138 4 PLIP interactions: 4 interactions with chain E Hydrophobic interactions: E:F.136 Hydrogen bonds: E:R.102 Salt bridges: E:R.122, E:R.138 ACT.7: 6 residues within 4Å: Chain F: I.30, Y.38, R.102, R.122, F.136, R.138 6 PLIP interactions: 6 interactions with chain F Hydrophobic interactions: F:F.136 Hydrogen bonds: F:Y.38, F:Y.38, F:R.102 Salt bridges: F:R.122, F:R.138 ACT.9: 6 residues within 4Å: Chain G: I.30, Y.38, R.102, R.122, F.136, R.138 4 PLIP interactions: 4 interactions with chain G Hydrophobic interactions: G:F.136 Salt bridges: G:R.102, G:R.122, G:R.138 ACT.10: 6 residues within 4Å: Chain H: I.30, Y.38, R.102, R.122, F.136, R.138 6 PLIP interactions: 6 interactions with chain H Hydrophobic interactions: H:F.136 Hydrogen bonds: H:Y.38, H:Y.38, H:R.102 Salt bridges: H:R.122, H:R.138 ACT.12: 6 residues within 4Å: Chain I: I.30, Y.38, R.102, R.122, F.136, R.138 5 PLIP interactions: 5 interactions with chain I Hydrophobic interactions: I:F.136 Hydrogen bonds: I:Y.38 Salt bridges: I:R.102, I:R.122, I:R.138 ACT.13: 6 residues within 4Å: Chain J: I.30, Y.38, R.102, R.122, F.136, R.138 5 PLIP interactions: 5 interactions with chain J Hydrophobic interactions: J:F.136 Hydrogen bonds: J:Y.38, J:R.102 Salt bridges: J:R.122, J:R.138 ACT.17: 6 residues within 4Å: Chain K: I.30, Y.38, R.102, R.122, F.136, R.138 4 PLIP interactions: 4 interactions with chain K Hydrophobic interactions: K:F.136 Hydrogen bonds: K:R.102 Salt bridges: K:R.122, K:R.138 ACT.18: 6 residues within 4Å: Chain L: I.30, Y.38, R.102, R.122, F.136, R.138 5 PLIP interactions: 5 interactions with chain L Hydrophobic interactions: L:F.136 Hydrogen bonds: L:Y.38 Salt bridges: L:R.102, L:R.122, L:R.138 ACT.19: 7 residues within 4Å: Chain M: I.30, Y.38, H.64, R.102, R.122, F.136, R.138 6 PLIP interactions: 6 interactions with chain M Hydrophobic interactions: M:F.136 Hydrogen bonds: M:Y.38, M:Y.38 Salt bridges: M:R.102, M:R.122, M:R.138 ACT.20: 7 residues within 4Å: Chain N: I.30, Y.38, H.64, R.102, R.122, F.136, R.138 6 PLIP interactions: 6 interactions with chain N Hydrophobic interactions: N:F.136 Hydrogen bonds: N:Y.38, N:Y.38 Salt bridges: N:R.102, N:R.122, N:R.138

6 x CD: CADMIUM ION(Non-covalent)

CD.3: 1 residues within 4Å: Chain B: D.94 4 PLIP interactions: 2 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.94, B:D.94, H2O.1, H2O.1 CD.8: 1 residues within 4Å: Chain F: D.94 2 PLIP interactions: 2 interactions with chain F Metal complexes: F:D.94, F:D.94 CD.11: 1 residues within 4Å: Chain H: D.93 1 PLIP interactions: 1 interactions with chain H Metal complexes: H:D.93 CD.14: 2 residues within 4Å: Chain J: D.94 Ligands: CD.16 2 PLIP interactions: 2 interactions with chain J Metal complexes: J:D.94, J:D.94 CD.15: 1 residues within 4Å: Chain J: D.93 2 PLIP interactions: 2 interactions with chain J Metal complexes: J:D.93, J:D.93 CD.16: 3 residues within 4Å: Chain J: D.93, D.94 Ligands: CD.14 1 PLIP interactions: 1 interactions with chain J Metal complexes: J:D.94

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rellos, P. et al., Structure of the Camkiidelta/Calmodulin Complex Reveals the Molecular Mechanism of Camkii Kinase Activation. Plos Biol. (2010)

Release Date

2008-12-23

Peptides

CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE TYPE II DELTA CHAIN: ABCDEFGHIJKLMN

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

M
M

N
N

CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE TYPE II DELTA CHAIN