SMTL ID : 2w4l.1

Human dCMP deaminase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-hexamer

Ligands

6 x ZN: ZINC ION(Non-covalent)

ZN.1: 3 residues within 4Å: Chain A: H.81, C.107, C.110 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.81, A:C.107, A:C.110, H2O.2 ZN.4: 3 residues within 4Å: Chain B: H.81, C.107, C.110 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.81, B:C.107, B:C.110, H2O.4 ZN.6: 3 residues within 4Å: Chain C: H.81, C.107, C.110 4 PLIP interactions: 3 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:H.81, C:C.107, C:C.110, H2O.5 ZN.7: 3 residues within 4Å: Chain D: H.81, C.107, C.110 4 PLIP interactions: 3 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:H.81, D:C.107, D:C.110, H2O.7 ZN.8: 4 residues within 4Å: Chain E: H.81, E.83, C.107, C.110 4 PLIP interactions: 3 interactions with chain E, 1 Ligand-Water interactions Metal complexes: E:H.81, E:C.107, E:C.110, H2O.8 ZN.10: 4 residues within 4Å: Chain F: H.81, E.83, C.107, C.110 4 PLIP interactions: 3 interactions with chain F, 1 Ligand-Water interactions Metal complexes: F:H.81, F:C.107, F:C.110, H2O.10

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 2 residues within 4Å: Chain A: Y.129, S.132 Ligand excluded by PLIP CL.3: 5 residues within 4Å: Chain A: N.108, D.133, E.134 Chain B: K.71, P.77 Ligand excluded by PLIP CL.5: 5 residues within 4Å: Chain A: K.71, P.77 Chain B: N.108, D.133, E.134 Ligand excluded by PLIP CL.9: 5 residues within 4Å: Chain E: D.133, E.134 Chain F: K.71, L.72, P.77 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Siponen, M.I. et al., The Crystal Structure of Human Dcmp Deaminase. To be Published

Release Date

2009-01-13

Peptides

DEOXYCYTIDYLATE DEAMINASE: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

DEOXYCYTIDYLATE DEAMINASE