SMTL ID : 2w5a.1

Human Nek2 kinase ADP-bound

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

monomer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 15 residues within 4Å: Chain A: I.14, G.15, G.17, S.18, C.22, V.35, K.37, V.68, E.87, Y.88, C.89, D.93, F.148, R.164 Ligands: MG.2 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:S.18, A:S.18, A:K.37, A:E.87, A:C.89, A:D.93, A:D.93 Water bridges: A:Y.19, A:D.93, A:R.164, A:R.164, A:R.164 Salt bridges: A:K.37, A:R.164

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain A: K.37, N.146, R.164 Ligands: ADP.1 No protein-ligand interaction detected (PLIP)

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 3 residues within 4Å: Chain A: K.152, Q.153, H.278 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.278 Water bridges: A:R.115, A:H.278 EDO.4: 8 residues within 4Å: Chain A: L.62, I.67, L.138, H.139, R.140, G.158, D.159, F.160 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:H.139, A:F.160 Water bridges: A:L.157, A:G.158 EDO.5: 3 residues within 4Å: Chain A: R.235, Y.238, D.242 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.235 EDO.6: 3 residues within 4Å: Chain A: I.247, E.264, N.268 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.264, A:N.268 Water bridges: A:I.247

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Westwood, I. et al., Insights Into the Conformational Variability and Regulation of Human Nek2 Kinase. J.Mol.Biol. (2009)

Release Date

2008-12-23

Peptides

SERINE/THREONINE-PROTEIN KINASE NEK2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

SERINE/THREONINE-PROTEIN KINASE NEK2

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