SMTL ID : 2w5e.1

STRUCTURAL AND BIOCHEMICAL ANALYSIS OF HUMAN PATHOGENIC ASTROVIRUS SERINE PROTEASE AT 2.0 ANGSTROM RESOLUTION

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-hexamer

Ligands

18 x CD: CADMIUM ION(Non-covalent)

CD.1: 5 residues within 4Å: Chain A: H.3, H.5, C.91 Ligands: CL.2, CL.4 Ligand excluded by PLIP CD.3: 4 residues within 4Å: Chain A: H.4, H.6 Chain B: E.50 Chain F: H.76 Ligand excluded by PLIP CD.5: 5 residues within 4Å: Chain A: K.1 Chain B: C.48, M.53 Ligands: CL.6, CL.9 Ligand excluded by PLIP CD.7: 5 residues within 4Å: Chain A: C.48 Chain B: K.1, H.2 Ligands: CL.8, CL.13 Ligand excluded by PLIP CD.10: 5 residues within 4Å: Chain B: H.3, H.5, C.91 Ligands: CL.11, CL.14 Ligand excluded by PLIP CD.12: 4 residues within 4Å: Chain A: E.50 Chain B: H.4, H.6 Chain C: H.76 Ligand excluded by PLIP CD.15: 4 residues within 4Å: Chain C: H.4, H.6 Chain D: E.50 Chain E: H.76 Ligand excluded by PLIP CD.17: 5 residues within 4Å: Chain C: H.3, H.5, C.91 Ligands: CL.16, CL.18 Ligand excluded by PLIP CD.20: 6 residues within 4Å: Chain C: K.1, H.2 Chain D: C.48, M.53 Ligands: CL.19, CL.24 Ligand excluded by PLIP CD.22: 5 residues within 4Å: Chain C: C.48 Chain D: K.1, H.2 Ligands: CL.21, CL.30 Ligand excluded by PLIP CD.26: 4 residues within 4Å: Chain A: H.76 Chain C: E.50 Chain D: H.4, H.6 Ligand excluded by PLIP CD.28: 5 residues within 4Å: Chain D: H.3, H.5, C.91 Ligands: CL.27, CL.29 Ligand excluded by PLIP CD.31: 4 residues within 4Å: Chain B: H.76 Chain E: H.4, H.6 Chain F: E.50 Ligand excluded by PLIP CD.34: 4 residues within 4Å: Chain E: H.3, H.5, C.91 Ligands: CL.32 Ligand excluded by PLIP CD.36: 5 residues within 4Å: Chain E: K.1, H.2 Chain F: C.48 Ligands: CL.35, CL.38 Ligand excluded by PLIP CD.41: 4 residues within 4Å: Chain D: H.76 Chain E: E.50 Chain F: H.4, H.6 Ligand excluded by PLIP CD.43: 5 residues within 4Å: Chain F: H.3, H.5, C.91 Ligands: CL.40, CL.46 Ligand excluded by PLIP CD.45: 5 residues within 4Å: Chain E: C.48 Chain F: K.1, H.2 Ligands: CL.42, CL.44 Ligand excluded by PLIP

28 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 6 residues within 4Å: Chain A: H.2, H.3, H.4, H.5 Chain F: H.76 Ligands: CD.1 Ligand excluded by PLIP CL.4: 3 residues within 4Å: Chain A: S.90, C.91 Ligands: CD.1 Ligand excluded by PLIP CL.6: 3 residues within 4Å: Chain A: H.2 Chain B: C.48 Ligands: CD.5 Ligand excluded by PLIP CL.8: 3 residues within 4Å: Chain A: C.48, M.53 Ligands: CD.7 Ligand excluded by PLIP CL.9: 5 residues within 4Å: Chain A: H.2 Chain B: V.15, K.22, C.48 Ligands: CD.5 Ligand excluded by PLIP CL.11: 5 residues within 4Å: Chain B: H.3, H.4, H.5 Chain C: H.76 Ligands: CD.10 Ligand excluded by PLIP CL.13: 3 residues within 4Å: Chain A: C.48 Chain B: H.2 Ligands: CD.7 Ligand excluded by PLIP CL.14: 4 residues within 4Å: Chain B: D.88, S.90, C.91 Ligands: CD.10 Ligand excluded by PLIP CL.16: 5 residues within 4Å: Chain C: H.2, H.3, H.4, H.5 Ligands: CD.17 Ligand excluded by PLIP CL.18: 3 residues within 4Å: Chain C: S.90, C.91 Ligands: CD.17 Ligand excluded by PLIP CL.19: 3 residues within 4Å: Chain C: H.2 Chain D: C.48 Ligands: CD.20 Ligand excluded by PLIP CL.21: 5 residues within 4Å: Chain C: V.15, K.22, C.48 Chain D: H.2 Ligands: CD.22 Ligand excluded by PLIP CL.23: 4 residues within 4Å: Chain C: K.9, P.10, G.11, A.79 Ligand excluded by PLIP CL.24: 5 residues within 4Å: Chain C: H.2 Chain D: V.15, K.22, C.48 Ligands: CD.20 Ligand excluded by PLIP CL.25: 4 residues within 4Å: Chain D: K.9, P.10, G.11, A.79 Ligand excluded by PLIP CL.27: 5 residues within 4Å: Chain A: H.76 Chain D: H.3, H.4, H.5 Ligands: CD.28 Ligand excluded by PLIP CL.29: 3 residues within 4Å: Chain D: S.90, C.91 Ligands: CD.28 Ligand excluded by PLIP CL.30: 3 residues within 4Å: Chain C: C.48 Chain D: H.2 Ligands: CD.22 Ligand excluded by PLIP CL.32: 6 residues within 4Å: Chain B: H.76 Chain E: H.2, H.3, H.4, H.5 Ligands: CD.34 Ligand excluded by PLIP CL.33: 2 residues within 4Å: Chain E: S.90, C.91 Ligand excluded by PLIP CL.35: 3 residues within 4Å: Chain E: H.2 Chain F: C.48 Ligands: CD.36 Ligand excluded by PLIP CL.37: 4 residues within 4Å: Chain E: K.9, P.10, G.11, A.79 Ligand excluded by PLIP CL.38: 3 residues within 4Å: Chain F: C.48, M.53 Ligands: CD.36 Ligand excluded by PLIP CL.39: 4 residues within 4Å: Chain F: K.9, P.10, G.11, A.79 Ligand excluded by PLIP CL.40: 5 residues within 4Å: Chain D: H.76 Chain F: H.3, H.4, H.5 Ligands: CD.43 Ligand excluded by PLIP CL.42: 3 residues within 4Å: Chain E: C.48, M.53 Ligands: CD.45 Ligand excluded by PLIP CL.44: 3 residues within 4Å: Chain E: C.48 Chain F: H.2 Ligands: CD.45 Ligand excluded by PLIP CL.46: 3 residues within 4Å: Chain F: S.90, C.91 Ligands: CD.43 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Speroni, S. et al., Structural and Biochemical Analysis of Human Pathogenic Astrovirus Serine Protease at 2.0 A Resolution. J.Mol.Biol. (2009)

Release Date

2009-03-10

Peptides

PUTATIVE SERINE PROTEASE: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

PUTATIVE SERINE PROTEASE