- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.07 Å
- Oligo State
- hetero-1-2-1-mer
- Ligands
- 4 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
- 8 x SO4: SULFATE ION(Non-functional Binders)
SO4.2: 2 residues within 4Å:- Chain A: F.36, L.100
4 PLIP interactions:3 interactions with chain A, 1 interactions with chain D- Water bridges: A:T.38, A:T.38, A:T.38, D:R.104
SO4.3: 5 residues within 4Å:- Chain A: K.16, L.113, P.114, A.115, E.116
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:A.115, A:E.116
- Salt bridges: A:K.16
SO4.4: 4 residues within 4Å:- Chain A: A.5, N.9, A.120
- Chain B: P.51
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:N.9
- Water bridges: A:N.9
SO4.13: 6 residues within 4Å:- Chain B: M.1, L.78, D.79, N.80, L.81, K.82
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:M.1, B:L.81, B:K.82
- Water bridges: B:N.80
SO4.14: 3 residues within 4Å:- Chain B: E.26, H.116, H.117
4 PLIP interactions:4 interactions with chain B- Water bridges: B:E.26, B:H.116
- Salt bridges: B:H.116, B:H.117
SO4.19: 3 residues within 4Å:- Chain C: F.36, P.37, T.38
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:T.38
SO4.20: 4 residues within 4Å:- Chain A: R.141
- Chain C: M.1, K.127, A.130
3 PLIP interactions:2 interactions with chain C, 1 interactions with chain A- Hydrogen bonds: C:M.1
- Water bridges: C:S.131
- Salt bridges: A:R.141
SO4.29: 5 residues within 4Å:- Chain C: P.119
- Chain D: E.26, R.30, M.55, H.116
6 PLIP interactions:6 interactions with chain D- Hydrogen bonds: D:E.26
- Water bridges: D:E.26, D:R.30, D:R.30
- Salt bridges: D:R.30, D:H.116
- 15 x XE: XENON(Non-covalent)(Covalent)
XE.5: 2 residues within 4Å:- Chain A: W.14, F.128
No protein-ligand interaction detected (PLIP)XE.6: 4 residues within 4Å:- Chain A: W.14, A.21, G.25, L.105
No protein-ligand interaction detected (PLIP)XE.7: 6 residues within 4Å:- Chain A: F.43, F.46, L.48, Q.54, V.55, Q.58
No protein-ligand interaction detected (PLIP)XE.8: 2 residues within 4Å:- Chain A: A.28, V.62
No protein-ligand interaction detected (PLIP)XE.9: 4 residues within 4Å:- Chain A: L.101, S.102, L.129
- Ligands: HEM.1
No protein-ligand interaction detected (PLIP)XE.10: 3 residues within 4Å:- Chain A: A.13, L.113, E.116
No protein-ligand interaction detected (PLIP)XE.16: 3 residues within 4Å:- Chain B: F.103, V.134
- Ligands: HEM.12
No protein-ligand interaction detected (PLIP)XE.17: 6 residues within 4Å:- Chain B: G.24, Y.28, G.64, V.67, L.68, L.106
No protein-ligand interaction detected (PLIP)XE.23: 2 residues within 4Å:- Chain C: W.14, F.128
No protein-ligand interaction detected (PLIP)XE.24: 5 residues within 4Å:- Chain C: F.43, F.46, Q.54, V.55, Q.58
No protein-ligand interaction detected (PLIP)XE.25: 5 residues within 4Å:- Chain C: A.28, V.62, L.101, L.105
- Ligands: XE.26
No protein-ligand interaction detected (PLIP)XE.26: 4 residues within 4Å:- Chain C: L.101, L.129
- Ligands: HEM.18, XE.25
No protein-ligand interaction detected (PLIP)XE.27: 2 residues within 4Å:- Chain C: A.13, E.116
No protein-ligand interaction detected (PLIP)XE.30: 4 residues within 4Å:- Chain D: F.103, G.107, V.134
- Ligands: HEM.28
No protein-ligand interaction detected (PLIP)XE.31: 6 residues within 4Å:- Chain D: G.24, A.27, Y.28, V.67, L.68, L.106
No protein-ligand interaction detected (PLIP)- 3 x K: POTASSIUM ION(Non-covalent)
K.11: 1 residues within 4Å:- Chain D: W.37
No protein-ligand interaction detected (PLIP)K.15: 3 residues within 4Å:- Chain B: A.62, K.65, K.66
2 PLIP interactions:1 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:A.62, H2O.9
K.22: 3 residues within 4Å:- Chain C: L.100, H.103
- Chain D: N.108
No protein-ligand interaction detected (PLIP)- 1 x PO4: PHOSPHATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Savino, C. et al., Pattern of Cavities in Globins: The Case of Human Hemoglobin. Biopolymers (2009)
- Release Date
- 2009-04-28
- Peptides
- HUMAN HEMOGLOBIN A: A
HUMAN HEMOGLOBIN A: BD
HUMAN HEMOGLOBIN A: C - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BD
DC
C
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.07 Å
- Oligo State
- hetero-1-2-1-mer
- Ligands
- 4 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
- 8 x SO4: SULFATE ION(Non-functional Binders)
- 15 x XE: XENON(Non-covalent)(Covalent)
- 3 x K: POTASSIUM ION(Non-covalent)
- 1 x PO4: PHOSPHATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Savino, C. et al., Pattern of Cavities in Globins: The Case of Human Hemoglobin. Biopolymers (2009)
- Release Date
- 2009-04-28
- Peptides
- HUMAN HEMOGLOBIN A: A
HUMAN HEMOGLOBIN A: BD
HUMAN HEMOGLOBIN A: C - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BD
DC
C