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SMTL ID : 2w7e.1
Crystal structure of Y51FbsSHMT obtained in the presence of Glycine
Coordinates
PDB Format
Method
X-RAY DIFFRACTION 1.69 Å
Oligo State
homo-dimer
Ligands
2 x
GLY
:
GLYCINE
(Non-covalent)
GLY.1:
9 residues within 4Å:
Chain A:
S.31
,
H.122
,
S.172
,
H.200
,
K.226
,
R.357
Chain B:
F.51
,
Y.61
Ligands:
PLP.2
7
PLIP interactions
:
6 interactions with chain A
,
1 interactions with chain B
Hydrogen bonds:
A:S.31
,
A:S.31
,
A:H.122
,
B:Y.61
Salt bridges:
A:H.200
,
A:K.226
,
A:R.357
GLY.5:
9 residues within 4Å:
Chain A:
F.51
,
Y.61
Chain B:
S.31
,
H.122
,
S.172
,
H.200
,
K.226
,
R.357
Ligands:
PLP.6
7
PLIP interactions
:
6 interactions with chain B
,
1 interactions with chain A
Hydrogen bonds:
B:S.31
,
B:S.31
,
B:H.122
,
A:Y.61
Salt bridges:
B:H.200
,
B:K.226
,
B:R.357
2 x
PLP
:
PYRIDOXAL-5'-PHOSPHATE
(Covalent)
PLP.2:
15 residues within 4Å:
Chain A:
S.93
,
G.94
,
A.95
,
H.122
,
A.171
,
S.172
,
D.197
,
A.199
,
H.200
,
T.223
,
H.225
,
K.226
Chain B:
G.256
,
G.257
Ligands:
GLY.1
17
PLIP interactions
:
12 interactions with chain A
,
3 Ligand-Ligand interactions
,
2 interactions with chain B
Hydrophobic interactions:
A:H.122
,
A:A.199
,
A:T.223
,
A:K.226
Hydrogen bonds:
A:G.94
,
A:A.95
,
G.1
,
B:G.256
,
B:G.257
Water bridges:
A:S.93
,
A:S.93
,
A:N.98
,
A:H.122
,
G.1
,
G.1
Salt bridges:
A:H.225
pi-Stacking:
A:H.122
PLP.6:
15 residues within 4Å:
Chain A:
G.256
,
G.257
Chain B:
S.93
,
G.94
,
A.95
,
H.122
,
A.171
,
S.172
,
D.197
,
A.199
,
H.200
,
T.223
,
H.225
,
K.226
Ligands:
GLY.5
17
PLIP interactions
:
12 interactions with chain B
,
2 interactions with chain A
,
3 Ligand-Ligand interactions
Hydrophobic interactions:
B:H.122
,
B:A.199
,
B:T.223
,
B:K.226
Hydrogen bonds:
B:G.94
,
B:A.95
,
A:G.256
,
A:G.257
,
G.5
Water bridges:
B:S.93
,
B:S.93
,
B:N.98
,
B:H.122
,
G.5
,
G.5
Salt bridges:
B:H.225
pi-Stacking:
B:H.122
2 x
MPD
:
(4S)-2-METHYL-2,4-PENTANEDIOL
(Non-functional Binders)
MPD.3:
5 residues within 4Å:
Chain A:
Y.152
,
D.153
,
R.156
,
E.185
,
I.186
4
PLIP interactions
:
4 interactions with chain A
Hydrophobic interactions:
A:Y.152
,
A:I.186
Water bridges:
A:K.182
,
A:K.182
MPD.7:
5 residues within 4Å:
Chain B:
Y.152
,
D.153
,
R.156
,
E.185
,
I.186
4
PLIP interactions
:
4 interactions with chain B
Hydrophobic interactions:
B:Y.152
,
B:I.186
Water bridges:
B:K.182
,
B:K.182
2 x
PO4
:
PHOSPHATE ION
(Non-functional Binders)
PO4.4:
4 residues within 4Å:
Chain A:
E.371
,
E.372
,
E.375
,
L.403
1
PLIP interactions
:
1 interactions with chain A
Water bridges:
A:E.375
PO4.8:
4 residues within 4Å:
Chain B:
E.371
,
E.372
,
E.375
,
L.403
1
PLIP interactions
:
1 interactions with chain B
Water bridges:
B:E.375
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Bhavani, B.S. et al., Importance of Tyrosine Residues of Bacillus Stearothermophilus Serine Hydroxymethyltransferase in Cofactor Binding and L-Allo-Thr Cleavage. FEBS J. (2008)
Release Date
2010-08-18
Peptides
SERINE HYDROXYMETHYLTRANSFERASE:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
A
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SERINE HYDROXYMETHYLTRANSFERASE
Toggle Identical (AB)
Related Entries With Identical Sequence
2w7d.1
|
2w7f.1
|
2w7g.1
|
2w7h.1
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