SMTL ID : 2w8z.1

Geobacillus stearothermophilus 6-phosphogluconate dehydrogenase with bound 6- phosphogluconate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

2 x 6PG: 6-PHOSPHOGLUCONIC ACID(Non-covalent)

6PG.1: 16 residues within 4Å: Chain A: M.15, N.103, V.128, S.129, G.130, G.131, K.183, H.186, N.187, E.190, Y.191, Q.260, K.261, R.288 Chain B: R.447, H.453 20 PLIP interactions: 18 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:N.103, A:N.103, A:V.128, A:G.130, A:G.131, A:K.183, A:N.187, A:N.187, A:N.187, A:Y.191, A:K.261 Water bridges: A:Y.191, A:T.263, A:R.288, A:R.288 Salt bridges: A:K.183, A:H.186, A:R.288, B:R.447, B:H.453 6PG.5: 16 residues within 4Å: Chain A: R.447, H.453 Chain B: N.103, S.129, G.130, G.131, K.183, H.186, N.187, E.190, Y.191, Q.260, K.261, T.263, R.288, I.367 19 PLIP interactions: 17 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:N.103, B:G.130, B:G.131, B:K.183, B:K.183, B:N.187, B:K.261 Water bridges: B:N.103, B:G.131, B:K.183, B:H.186, B:E.190, B:T.263, B:R.288 Salt bridges: B:K.183, B:H.186, B:R.288, A:R.447, A:H.453

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain A: K.257, A.292, M.293, K.294, D.295 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:A.292, A:K.294, A:D.295, A:D.295 Water bridges: A:E.296 Salt bridges: A:K.257

2 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.3: 5 residues within 4Å: Chain A: R.447, H.453 Chain B: G.259, Q.260, K.261 7 PLIP interactions: 4 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:R.447, A:H.453, B:Q.260, B:K.261, B:K.261 Water bridges: A:R.447, A:R.447 TRS.4: 5 residues within 4Å: Chain A: S.346, E.347, N.350, W.351, N.352 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:S.346, A:E.347, A:N.350, A:W.351, A:N.352 Water bridges: A:S.346, A:S.346

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cameron, S. et al., Geobacillus Stearothermophilus 6-Phosphogluconate Dehydrogenase, Complexed with 6-Phosphogluconate. Acta Crystallogr.,Sect.F (2009)

Release Date

2009-04-07

Peptides

6-PHOSPHOGLUCONATE DEHYDROGENASE, DECARBOXYLATING: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

6-PHOSPHOGLUCONATE DEHYDROGENASE, DECARBOXYLATING