SMTL ID : 2w92.1

Structure of a Streptococcus pneumoniae family 85 glycoside hydrolase, Endo-D, in complex with NAG-thiazoline.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

monomer

Ligands

1 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)

1PE.1: 1 residues within 4Å: Chain A: W.261 No protein-ligand interaction detected (PLIP)

1 x NGT: 3AR,5R,6S,7R,7AR-5-HYDROXYMETHYL-2-METHYL-5,6,7,7A-TETRAHYDRO-3AH-PYRANO[3,2-D]THIAZOLE-6,7-DIOL(Non-covalent)

NGT.2: 9 residues within 4Å: Chain A: L.62, W.97, F.166, N.168, E.170, Y.206, F.245, E.274, F.304 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.62, A:W.97, A:F.166, A:Y.206 Hydrogen bonds: A:N.168, A:E.170, A:E.274 Water bridges: A:W.97

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Abbott, D.W. et al., Streptococcus Pneumoniae Endohexosaminidase D, Structural and Mechanistic Insight Into Substrate-Assisted Catalysis in Family 85 Glycoside Hydrolases. J.Biol.Chem. (2009)

Release Date

2009-01-27

Peptides

ENDO-BETA-N-ACETYLGLUCOSAMINIDASE D: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

ENDO-BETA-N-ACETYLGLUCOSAMINIDASE D

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