SMTL ID : 2w9l.4 (3 other biounits)

CANINE ADENOVIRUS TYPE 2 FIBRE HEAD IN COMPLEX WITH CAR DOMAIN D1 AND SIALIC ACID

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.91 Å

Oligo State

hetero-3-3-mer

Ligands

2 x GAL- SIA: N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose(Non-covalent)

GAL-SIA.1: 9 residues within 4Å: Chain A: N.33, Y.63, Q.70, S.71, Q.72, F.73, S.74, N.90, R.170 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:N.33, A:N.33, A:S.71, A:Q.72, A:Q.72, A:S.74, A:N.90, A:N.90 Salt bridges: A:R.170 GAL-SIA.2: 9 residues within 4Å: Chain B: N.33, Y.63, Q.70, S.71, Q.72, F.73, S.74, N.90, R.170 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:F.73 Hydrogen bonds: B:N.33, B:S.71, B:Q.72, B:Q.72, B:S.74, B:N.90, B:N.90 Salt bridges: B:R.170

1 x GL0- SIA: N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-gulopyranose(Non-covalent)

GL0-SIA.3: 9 residues within 4Å: Chain C: I.32, N.33, Y.63, S.71, Q.72, F.73, S.74, N.90, R.170 8 PLIP interactions: 8 interactions with chain C Hydrogen bonds: C:N.33, C:S.71, C:Q.72, C:Q.72, C:S.74, C:N.90, C:N.90 Salt bridges: C:R.170

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Seiradake, E. et al., The cell adhesion molecule "CAR" and sialic acid on human erythrocytes influence adenovirus in vivo biodistribution. PLoS Pathog. (2009)

Release Date

2009-03-17

Peptides

FIBRE PROTEIN: ABC
COXSACKIEVIRUS AND ADENOVIRUS RECEPTOR: DEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

B
M

C
N

D
V

E
X

F
Y

FIBRE PROTEIN

COXSACKIEVIRUS AND ADENOVIRUS RECEPTOR

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