SMTL ID : 2wah.1

Crystal Structure of an IgG1 Fc Glycoform (Man9GlcNAc2)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.51 Å

Oligo State

homo-dimer

Ligands

1 x NAG- NAG- BMA- MAN- MAN- MAN- MAN- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN-MAN-MAN-MAN-MAN.1: 11 residues within 4Å: Chain A: F.5, F.7, P.8, P.11, V.28, D.29, N.61, T.63, R.65, D.140, I.141 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.65

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.2: 6 residues within 4Å: Chain B: F.5, F.7, D.29, Q.59, N.61, R.65 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:Q.59

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Crispin, M. et al., Carbohydrate and Domain Architecture of an Immature Antibody Glycoform Exhibiting Enhanced Effector Functions. J.Mol.Biol. (2009)

Release Date

2009-03-10

Peptides

IG GAMMA-1 CHAIN C REGION: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

IG GAMMA-1 CHAIN C REGION