SMTL ID : 2wao.1

Structure of a family two carbohydrate esterase from Clostridium thermocellum in complex with cellohexaose

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x BGC- BGC- BGC- BGC- BGC: beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose

BGC-BGC-BGC-BGC-BGC.1: 15 residues within 4Å: Chain A: S.131, Y.136, F.147, S.176, G.177, Y.184, M.263, W.265, Q.298, Q.299, D.308, W.309, H.310 Ligands: FMT.2, FMT.10 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.136 Water bridges: A:S.98, A:S.98, A:F.147

11 x FMT: FORMIC ACID(Non-functional Binders)

FMT.2: 7 residues within 4Å: Chain A: D.130, S.131, I.132, G.177, T.223, N.224 Ligands: BGC-BGC-BGC-BGC-BGC.1 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:D.130, A:S.131, A:I.132, A:G.177, A:N.224 Water bridges: A:S.131 FMT.3: 3 residues within 4Å: Chain A: F.209, S.210, N.250 4 PLIP interactions: 4 interactions with chain A Water bridges: A:F.209, A:F.209, A:F.209, A:S.210 FMT.4: 2 residues within 4Å: Chain A: F.67, V.76 No protein-ligand interaction detected (PLIP) FMT.5: 1 residues within 4Å: Chain A: G.10 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.10 Water bridges: A:G.10 FMT.6: 2 residues within 4Å: Chain A: Q.215, D.253 1 PLIP interactions: 1 interactions with chain A Water bridges: A:H.255 FMT.7: 3 residues within 4Å: Chain A: T.228, S.229, F.230 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:F.230 FMT.8: 2 residues within 4Å: Chain A: I.161, R.164 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.164 FMT.9: 2 residues within 4Å: Chain A: N.281, R.285 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.285, A:R.285 Water bridges: A:N.281 FMT.10: 6 residues within 4Å: Chain A: W.175, S.176, G.177, I.178, N.183 Ligands: BGC-BGC-BGC-BGC-BGC.1 6 PLIP interactions: 6 interactions with chain A Water bridges: A:W.175, A:N.183, A:P.190, A:R.195, A:R.195, A:R.195 FMT.11: 6 residues within 4Å: Chain A: Y.13, N.14, G.15, S.169, N.171, Y.212 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:G.15, A:S.169 Water bridges: A:N.14, A:L.121, A:S.169, A:N.171 FMT.12: 5 residues within 4Å: Chain A: F.296, P.297, L.318, M.319, R.322 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:L.318 Water bridges: A:R.322, A:R.322, A:R.322

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Montanier, C. et al., The Active Site of a Carbohydrate Esterase Displays Divergent Catalytic and Noncatalytic Binding Functions. Plos Biol. (2009)

Release Date

2009-10-06

Peptides

ENDOGLUCANASE E: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

ENDOGLUCANASE E