SMTL ID : 2wax.2 (1 other biounit)

Structure of the human DDX6 C-terminal domain in complex with an EDC3- FDF peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

hetero-1-1-mer

Ligands

3 x CXS: 3-CYCLOHEXYL-1-PROPYLSULFONIC ACID(Non-covalent)

CXS.1: 7 residues within 4Å: Chain A: E.28, R.29, V.32, R.56, L.59, L.60, F.119 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:V.32, A:R.56, A:L.59, A:L.60, A:L.60, A:F.119 Water bridges: A:R.29 CXS.2: 4 residues within 4Å: Chain A: F.39, S.40, L.42, Y.69 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:Y.69 CXS.4: 5 residues within 4Å: Chain A: Y.150, R.153, F.154 Chain B: I.38, Y.41 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:Y.150 Salt bridges: A:R.153 Hydrophobic interactions: B:Y.41

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.3: 3 residues within 4Å: Chain A: N.52, S.53, S.54 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.54 Water bridges: A:Q.55 Salt bridges: A:K.77

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tritschler, F. et al., Structural Basis for the Mutually Exclusive Anchoring of P Body Components Edc3 and Tral to the Dead Box Protein Ddx6/Me31B. Mol.Cell (2009)

Release Date

2009-03-24

Peptides

ATP-DEPENDENT RNA HELICASE DDX6: A
ENHANCER OF MRNA-DECAPPING PROTEIN 3: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

ATP-DEPENDENT RNA HELICASE DDX6

ENHANCER OF MRNA-DECAPPING PROTEIN 3

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